View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0744_low_2 (Length: 482)
Name: NF0744_low_2
Description: NF0744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0744_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 26 - 475
Target Start/End: Complemental strand, 43207066 - 43206613
Alignment:
| Q |
26 |
atcatgtggtgcttcaaatatggcagaaaatgaaaaaacccaaacccataacatagttttcagattttttactgcactgctctttagttttagttagttt |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43207066 |
atcatgtggtgcttcaaatatggcagaaaatgaaaaaacccaaacccataacatagttttcagattttttactgcactgctctttagttttagttagttt |
43206967 |
T |
|
| Q |
126 |
atttagaatgaacggtgcatgcaagttaattacttatagtttcatttgttaatactttaataagctatatttatcagttaaaaaattgtattatgaattg |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
43206966 |
atttagaatgaacggtgcatgcaagttaattacttatagtttcatttgttaatactttaataagctatacttatgagttaaaaaattgtattatgaattg |
43206867 |
T |
|
| Q |
226 |
agagaaatgaatgaatactcattgtttcattaattggaaaggttcagtacaacatgtat----acaaaataggaagcctatgctaactattgtgtactaa |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43206866 |
agagaaatgaatgaatactcattgtttcattaattggaaaggttcagtacaacatgtatatacacaaaataggaagcctatgctaactattgtgtactaa |
43206767 |
T |
|
| Q |
322 |
ctagtacaatagcacttgaactcaagtagcttgctaagcaagttacatagtccacaatagaaatcaaagagaaactcctatatattgtaataaactgtat |
421 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43206766 |
ctagtagaatagcacttgaactcaagtagcttgctaagcaagttacatagtctataatagaaatcaaagagaaactcctatatattgtaataaactgtat |
43206667 |
T |
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| Q |
422 |
attgcatctcttaaagcttggtttcttgttttcatctttcttctatattattcg |
475 |
Q |
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| T |
43206666 |
attgcatctcttaaagcttggtttcttgttttcatctttcttctattttattcg |
43206613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 192
Target Start/End: Complemental strand, 43186439 - 43186277
Alignment:
| Q |
30 |
tgtggtgcttcaaatatggcagaaaatgaaaaaacccaaacccataacatagttttcagattttttactgcactgctctttagttttagttagtttattt |
129 |
Q |
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|||||||| ||||| |||||| ||||||||||| || || | |||||||||||||||||||| ||||||||| |||||||||||||||| ||| || |
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| T |
43186439 |
tgtggtgcctcaaacatggcaaaaaatgaaaaacccataaac---aacatagttttcagatttttgactgcactgttctttagttttagtta-tttgttc |
43186344 |
T |
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| Q |
130 |
agaatgaacg----gtgcatgcaagttaattacttatagtttcatttgttaatactttaataagcta |
192 |
Q |
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|||||||| | || ||||||||||||| ||||||||| |||||| ||| |||||||||||| |
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| T |
43186343 |
agaatgaatgaatcgtaaatgcaagttaattgtttatagtttgttttgttcataatttaataagcta |
43186277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 413
Target Start/End: Complemental strand, 18832229 - 18832153
Alignment:
| Q |
337 |
ttgaactcaagtagcttgctaagcaagttacatagtccacaatagaaatcaaagagaaactcctatatattgtaata |
413 |
Q |
| |
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|||||||| ||| |||||||| ||||||||||||||| | | || ||| |||||||||||||| || |||||||||| |
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| T |
18832229 |
ttgaactctagtggcttgctatgcaagttacatagtctaaactaaaaaacaaagagaaactccgatttattgtaata |
18832153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 285
Target Start/End: Original strand, 18835497 - 18835568
Alignment:
| Q |
214 |
tattatgaattgagagaaatgaatgaatactcattgtttcattaattggaaaggttcagtacaacatgtata |
285 |
Q |
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|||||||||||||||||| |||||||||||||||||||| ||| | | ||| ||||| ||| | |||||||| |
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| T |
18835497 |
tattatgaattgagagaagtgaatgaatactcattgtttgattgactagaatggttccgtatatcatgtata |
18835568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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