View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0744_low_22 (Length: 265)

Name: NF0744_low_22
Description: NF0744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0744_low_22
NF0744_low_22
[»] chr6 (4 HSPs)
chr6 (2-162)||(11609375-11609535)
chr6 (1-140)||(20916349-20916488)
chr6 (1-111)||(20926313-20926423)
chr6 (2-123)||(26903563-26903684)
[»] chr4 (2 HSPs)
chr4 (2-148)||(42329338-42329484)
chr4 (3-105)||(6612710-6612812)
[»] chr3 (6 HSPs)
chr3 (2-162)||(44491125-44491285)
chr3 (2-123)||(6010005-6010126)
chr3 (2-123)||(17782893-17783014)
chr3 (2-123)||(19091520-19091641)
chr3 (3-93)||(54565540-54565631)
chr3 (2-123)||(8562048-8562169)
[»] scaffold0123 (1 HSPs)
scaffold0123 (42-155)||(31904-32016)
[»] chr5 (2 HSPs)
chr5 (3-125)||(22790074-22790196)
chr5 (5-123)||(22288426-22288544)
[»] scaffold0252 (1 HSPs)
scaffold0252 (2-123)||(3951-4072)
[»] chr1 (2 HSPs)
chr1 (1-123)||(41327550-41327672)
chr1 (1-80)||(41337824-41337903)
[»] chr2 (1 HSPs)
chr2 (2-139)||(45009939-45010075)
[»] chr8 (4 HSPs)
chr8 (2-113)||(15994389-15994500)
chr8 (5-123)||(14501770-14501888)
chr8 (1-113)||(29383116-29383227)
chr8 (2-123)||(22184913-22185034)
[»] chr7 (2 HSPs)
chr7 (22-131)||(8866222-8866331)
chr7 (2-123)||(3208981-3209102)


Alignment Details
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 2 - 162
Target Start/End: Original strand, 11609375 - 11609535
Alignment:
Q  2 tcttcaattttatttcgggagactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcgggc 101  Q
    ||||||||||| || |||  ||||| |||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  11609375 tcttcaatttttttacggtggactaatgtctctcttaaaaataagaggtccggattgaattgccgaactaggtactttaaatctggaattgcattcgggc 11609474  T
Q  102 tacctaaacccctgcaattccaacttatcaggctcattttcctcgacacctaatcttcttc 162  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11609475 tacccaaacccctgcaattccaacttatcaggctcattttcctcgacacctaatcgtcttc 11609535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 20916488 - 20916349
Alignment:
Q  1 atcttcaattttatttcgggagactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcggg 100  Q
    |||||||||||||||||||  ||||| | |||| |||||||| | ||||||||| |||||| |  |||||||||  ||||  ||  |||||||  ||| |    
T  20916488 atcttcaattttatttcggtggactaatatctcacttaagaagaggaggtccgggttgaagggtagaactaggtgttttaggtcgggaattgcgctcgag 20916389  T
Q  101 ctacctaaacccctgcaattccaacttatcaggctcattt 140  Q
    ||||||||||||| ||||||||| | ||| || |||||||    
T  20916388 ctacctaaaccccggcaattccaccctataagactcattt 20916349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 20926423 - 20926313
Alignment:
Q  1 atcttcaattttatttcgggagactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcggg 100  Q
    |||||||||||||||||||  ||||| | |||| |||||||| | |||||| ||||||||||| ||| ||| ||| ||||  ||  |||||||  ||| |    
T  20926423 atcttcaattttatttcggtggactaatatctcacttaagaagaggaggtctggattgaagtgtcgagctaagtattttaggtcaggaattgcgctcgag 20926324  T
Q  101 ctacctaaacc 111  Q
    |||||||||||    
T  20926323 ctacctaaacc 20926313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 26903684 - 26903563
Alignment:
Q  2 tcttcaattttatttcgg-gagactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcggg 100  Q
    |||||||||||||| ||| ||| |||| ||||| ||||  ||||| || ||||||||||||||||| ||||||||||| |  ||  |||| | | |||||    
T  26903684 tcttcaattttattacggtgag-ctagagtctcacttagaaataaaagatccggattgaagtgccggactaggtacttaaggtcgggaatagtactcggg 26903586  T
Q  101 ctacctaaacccctgcaattcca 123  Q
    ||||||| |||||  ||||||||    
T  26903585 ctacctacaccccgacaattcca 26903563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 148
Target Start/End: Complemental strand, 42329484 - 42329338
Alignment:
Q  2 tcttcaattttatttcgggagactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcgggc 101  Q
    |||||||||||||| |||  ||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42329484 tcttcaattttattacggtggactaatgtctcacttaaaaataagaggtccggattgaagtgccgaactaggtactttaaatctggaattgcattcgggc 42329385  T
Q  102 tacctaaacccctgcaattccaacttatcaggctcattttcctcgac 148  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  42329384 tacccaaacccctgcaattccaacttatcaggctcattttcctcgac 42329338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 6612812 - 6612710
Alignment:
Q  3 cttcaattttatttcgggagactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcgggct 102  Q
    ||||||||||||||||||| ||||||||||| |||||||| |  | |||||||||||||||| |||  || || ||||||||  || ||||  |||||||    
T  6612812 cttcaattttatttcgggatactagtgtctcacttaagaagagtacgtccggattgaagtgctgaaggagatattttaaatcaggagttgcgctcgggct 6612713  T
Q  103 acc 105  Q
    |||    
T  6612712 acc 6612710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 2 - 162
Target Start/End: Complemental strand, 44491285 - 44491125
Alignment:
Q  2 tcttcaattttatttcgggagactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcgggc 101  Q
    ||||||||||||||||||  |||||| |||||  |||| ||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  44491285 tcttcaattttatttcggtggactagcgtctcagttaaaaataaaaggtccggattgaagtaccgaactaggtactttaaatctggaattgcattcgggc 44491186  T
Q  102 tacctaaacccctgcaattccaacttatcaggctcattttcctcgacacctaatcttcttc 162  Q
    |||| ||||||||||||||||||||||| || |||||||||||||||| |||||| |||||    
T  44491185 tacccaaacccctgcaattccaacttattagactcattttcctcgacaactaatcatcttc 44491125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 6010005 - 6010126
Alignment:
Q  2 tcttcaattttatttcgg-gagactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcggg 100  Q
    |||||||||||||||||| ||| |||| ||||| ||||| ||||| ||||||||||| || ||||||||||||||||| |  ||  |||||||| |||||    
T  6010005 tcttcaattttatttcggtgag-ctagagtctcacttaaaaataaaaggtccggattaaaatgccgaactaggtacttaaggtcaggaattgcactcggg 6010103  T
Q  101 ctacctaaacccctgcaattcca 123  Q
    ||||||| |||||  ||||||||    
T  6010104 ctacctacaccccgacaattcca 6010126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 17783014 - 17782893
Alignment:
Q  2 tcttcaattttatttcgg-gagactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcggg 100  Q
    |||||||||||||||||| ||| |||| ||||| ||||| ||||| |||||| ||||||| ||||||||||| ||||| |  ||  |||||||| |||||    
T  17783014 tcttcaattttatttcggtgag-ctagagtctcacttaaaaataaaaggtccagattgaaatgccgaactagatacttaaggtcgggaattgcactcggg 17782916  T
Q  101 ctacctaaacccctgcaattcca 123  Q
    ||||||| |||||  ||||||||    
T  17782915 ctacctacaccccgacaattcca 17782893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 19091641 - 19091520
Alignment:
Q  2 tcttcaattttatttcgg-gagactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcggg 100  Q
    |||||||||||||||||| ||| |||| ||||| ||||| ||||| |||||| ||||||| ||||||||||| ||||| |  ||  |||||||| |||||    
T  19091641 tcttcaattttatttcggtgag-ctagagtctcacttaaaaataaaaggtccagattgaaatgccgaactagatacttaaggtcgggaattgcactcggg 19091543  T
Q  101 ctacctaaacccctgcaattcca 123  Q
    ||||||| |||||  ||||||||    
T  19091542 ctacctacaccccgacaattcca 19091520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 54565540 - 54565631
Alignment:
Q  3 cttcaattttatttcgggagactagtgtctcgcttaagaataagagg-tccggattgaagtgccgaactaggtactttaaatctagaattgc 93  Q
    ||||||||||||| ||   ||||| |||||| ||||| ||||| ||| |||||||| ||||||||||||| |||||||||||| ||||||||    
T  54565540 cttcaattttattacgatggactaatgtctcacttaaaaataatagggtccggattaaagtgccgaactatgtactttaaatcaagaattgc 54565631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 8562169 - 8562048
Alignment:
Q  2 tcttcaattttatttcgg-gagactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcggg 100  Q
    |||||||||||||| ||| ||| |||| ||||| |||||||| |  || ||||| ||||||||||| ||||||||||| |  || ||||||| | |||||    
T  8562169 tcttcaattttattacggtgag-ctagagtctcacttaagaaaagaagatccgggttgaagtgccggactaggtacttaaggtcgagaattgtactcggg 8562071  T
Q  101 ctacctaaacccctgcaattcca 123  Q
    ||||||| |||||  ||||||||    
T  8562070 ctacctacaccccgacaattcca 8562048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 42 - 155
Target Start/End: Complemental strand, 32016 - 31904
Alignment:
Q  42 ataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcgggctacctaaacccctgcaattccaacttatcaggctcatttt 141  Q
    ||||||||||||| |||||||||| |||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||| |||    
T  32016 ataagaggtccggtttgaagtgccaaactagatactttaaatctggaattgcattcgggctacccaaacccctgcaattccaacttatcagactca-ttt 31918  T
Q  142 cctcgacacctaat 155  Q
    |||||||| |||||    
T  31917 cctcgacaactaat 31904  T

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Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 22790074 - 22790196
Alignment:
Q  3 cttcaattttatttcgggagactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcgggct 102  Q
    ||||||||||||| |||  ||||| |||||| ||||||||||| ||  ||||||||||||||||||||||||||||||||||   ||||||| |||||||    
T  22790074 cttcaattttattacggtggactaatgtctcacttaagaataatagaaccggattgaagtgccgaactaggtactttaaatcagaaattgcactcgggct 22790173  T
Q  103 acctaaacccctgcaattccaac 125  Q
    |||||||||||||||||||||||    
T  22790174 acctaaacccctgcaattccaac 22790196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 22288544 - 22288426
Alignment:
Q  5 tcaattttatttcgg-gagactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcgggcta 103  Q
    ||||||||||||||| ||| |||| ||||| ||||| ||||| |||||||||||||| ||||||||||||||||| |  ||  |||||| | ||||||||    
T  22288544 tcaattttatttcggtgag-ctagagtctcacttaaaaataaaaggtccggattgaaatgccgaactaggtacttaaggtcgggaattgtactcgggcta 22288446  T
Q  104 cctaaacccctgcaattcca 123  Q
    |||| |||||  ||||||||    
T  22288445 cctacaccccgacaattcca 22288426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 4072 - 3951
Alignment:
Q  2 tcttcaattttatttcgg-gagactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcggg 100  Q
    |||||||||||||||||| ||| |||| ||||| |||||||| |  || ||||||||||||||||| ||||||||||| |  ||| |||||||| |||||    
T  4072 tcttcaattttatttcggtgag-ctagagtctcacttaagaaaagaagatccggattgaagtgccggactaggtacttaaggtctggaattgcactcggg 3974  T
Q  101 ctacctaaacccctgcaattcca 123  Q
    ||||||| ||||  |||||||||    
T  3973 ctacctacaccctggcaattcca 3951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 41327672 - 41327550
Alignment:
Q  1 atcttcaattttatttcgggagactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcggg 100  Q
    |||||||||||||||||||  ||||| | |||| |||||||| | ||||||||||||||||||  |||||||||| ||||  ||   ||||||  ||| |    
T  41327672 atcttcaattttatttcggtggactaatatctcacttaagaagaggaggtccggattgaagtgtagaactaggtattttaggtcagcaattgcgctcgag 41327573  T
Q  101 ctacctaaacccctgcaattcca 123  Q
    ||||||||||||| |||||||||    
T  41327572 ctacctaaaccccggcaattcca 41327550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 41337903 - 41337824
Alignment:
Q  1 atcttcaattttatttcgggagactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtacttta 80  Q
    |||||||||||||||||||  ||||| | |||| |||||||| | ||||||||||||||||||  |||||||||| ||||    
T  41337903 atcttcaattttatttcggtggactaatatctcacttaagaagaggaggtccggattgaagtgtagaactaggtatttta 41337824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 45010075 - 45009939
Alignment:
Q  2 tcttcaattttatttcgggagactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcgggc 101  Q
    |||||||||||||||||   |||||  ||||| |||||||| | || ||||||||| |||||||||| |||||| || || ||  |||||||  ||||||    
T  45010075 tcttcaattttatttcgatggactaaagtctcacttaagaagaggatgtccggattaaagtgccgaattaggtatttcaagtcgggaattgcgctcgggc 45009976  T
Q  102 tacctaaacccctgcaattccaacttatcaggctcatt 139  Q
    |||||||| |||  ||||||||||||||||| ||||||    
T  45009975 tacctaaa-cccgacaattccaacttatcagactcatt 45009939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 113
Target Start/End: Original strand, 15994389 - 15994500
Alignment:
Q  2 tcttcaattttatttcgg-gagactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcggg 100  Q
    |||||||||||||||||| ||| |||  ||||| ||||| ||||| |||||||||||||| |||||||||||||| || |  ||| |||||||| |||||    
T  15994389 tcttcaattttatttcggtgag-ctaaagtctcacttaaaaataaaaggtccggattgaaatgccgaactaggtatttaaggtctggaattgcactcggg 15994487  T
Q  101 ctacctaaacccc 113  Q
    ||||||| |||||    
T  15994488 ctacctacacccc 15994500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 14501888 - 14501770
Alignment:
Q  5 tcaattttatttcgg-gagactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcgggcta 103  Q
    ||||||||||||||| ||| |||| ||||| ||||| ||||| |||| | ||||||| ||||||||||||||||| |  ||  |||||||| ||||||||    
T  14501888 tcaattttatttcggtgag-ctagagtctcacttaaaaataaaaggttcagattgaaatgccgaactaggtacttaaggtcgggaattgcactcgggcta 14501790  T
Q  104 cctaaacccctgcaattcca 123  Q
    |||| |||||  ||||||||    
T  14501789 cctacaccccgacaattcca 14501770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 29383227 - 29383116
Alignment:
Q  1 atcttcaattttatttcgggagactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcggg 100  Q
    |||||||||||||||||||  |||||||||||| ||||| ||||  ||||||  ||||||||  ||||| ||||| || || ||  ||||||||  | ||    
T  29383227 atcttcaattttatttcggtggactagtgtctcacttaaaaatagtaggtccatattgaagtatcgaacgaggtatttcaagtcgggaattgca-cccgg 29383129  T
Q  101 ctacctaaacccc 113  Q
    |||||||||||||    
T  29383128 ctacctaaacccc 29383116  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 22185034 - 22184913
Alignment:
Q  2 tcttcaattttatttcgg-gagactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcggg 100  Q
    |||||||||||||||| | ||| |||| ||||| ||||| ||||| || |||||||||||| |||| |||||| |||| |  ||  |||||| | |||||    
T  22185034 tcttcaattttatttctgtgag-ctagagtctcacttaaaaataaaagatccggattgaagggccggactaggcacttgatgtcgggaattgtactcggg 22184936  T
Q  101 ctacctaaacccctgcaattcca 123  Q
    ||| |||||||||  ||||||||    
T  22184935 ctatctaaaccccgacaattcca 22184913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 8866222 - 8866331
Alignment:
Q  22 gactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcgggctacctaaacccctgcaattc 121  Q
    |||||||||||| ||||| ||||  |||||| |||||||||||||||| ||||| || || ||  ||||||| || ||||||||||| ||||  ||||||    
T  8866222 gactagtgtctcacttaaaaatagtaggtcctgattgaagtgccgaaccaggtatttcaagtccggaattgcgttagggctacctaagccccgacaattc 8866321  T
Q  122 caacttatca 131  Q
    ||||| ||||    
T  8866322 caactgatca 8866331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 3208981 - 3209102
Alignment:
Q  2 tcttcaattttatttcgg-gagactagtgtctcgcttaagaataagaggtccggattgaagtgccgaactaggtactttaaatctagaattgcattcggg 100  Q
    |||||||||||||||||| ||| |||| ||||| |||| |||||| |  ||||||||||||||||| ||||||||||| | |||  ||||||   |||||    
T  3208981 tcttcaattttatttcggtgag-ctagagtctcacttatgaataaaatatccggattgaagtgccggactaggtacttaagatcaggaattgtgctcggg 3209079  T
Q  101 ctacctaaacccctgcaattcca 123  Q
    ||||||| |||||  ||||||||    
T  3209080 ctacctataccccgacaattcca 3209102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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