View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0744_low_27 (Length: 250)
Name: NF0744_low_27
Description: NF0744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0744_low_27 |
 | |
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| [»] scaffold0428 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 31564961 - 31565117
Alignment:
| Q |
1 |
ccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31564961 |
ccgctgacaagaaatccggaagacgagttgctgaaggaagaatcggtacatacattcacgattcacgcattagtgttctaattgaagtgaaatgtgaaac |
31565060 |
T |
|
| Q |
101 |
ggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgca |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
31565061 |
ggactttatcggtagaagtgagaaattcaaggagttggttcatgatcttgcaatgca |
31565117 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 33414747 - 33414568
Alignment:
| Q |
1 |
ccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaac |
100 |
Q |
| |
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||||||| |||||||||||||||| || |||||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||||||| |||||||| |
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| T |
33414747 |
ccgctgataagaaatccggaagactagcagctgaaggaagaatcggtacatacattcacgatgcacgtattggtgttctaattgaagtgaactgtgaaac |
33414648 |
T |
|
| Q |
101 |
ggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttc |
180 |
Q |
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||||||| | || ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33414647 |
ggactttgttggcagaagtgagaaattcaaggagttggttgatgatcttgcaatgcaagttgctgcttgtccacaggttc |
33414568 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 73 - 180
Target Start/End: Complemental strand, 33269648 - 33269541
Alignment:
| Q |
73 |
gtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtcc |
172 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||| | || |||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||| |
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| T |
33269648 |
gtgttctaattgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaagaagttggttgatgatcttgcaatgcaagttgctgcttgtcc |
33269549 |
T |
|
| Q |
173 |
acaggttc |
180 |
Q |
| |
|
|||||||| |
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|
| T |
33269548 |
acaggttc |
33269541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 33258375 - 33258194
Alignment:
| Q |
1 |
ccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata-cattcacgattcacacattagtgttctaattgaagtgaaatgtgaaa |
99 |
Q |
| |
|
||||||| ||||||||||| |||| || | ||||||||||||| |||||| || || ||||||||||||| ||||||||||||||||||| |||||| |
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|
| T |
33258375 |
ccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaa |
33258276 |
T |
|
| Q |
100 |
cggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgctt-gtccacaggttc |
180 |
Q |
| |
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| |||||| | || |||||||||||||| |||||||| ||| | ||||||||||||||||| ||| || |||||||||||| |
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| T |
33258275 |
ccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc |
33258194 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 169
Target Start/End: Complemental strand, 33384156 - 33384040
Alignment:
| Q |
53 |
cattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgca |
152 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||| ||| |||| |||||| |||| |||||||||||| | |||||||| ||| ||||||||||| |
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| T |
33384156 |
cattcactattcacacatcggtgttctaattgaagtgaactgtcaaaccgactttgtcggcagaagtgagaaaattaaggagttggttgatgatcttgca |
33384057 |
T |
|
| Q |
153 |
atgcaagttgctgcttg |
169 |
Q |
| |
|
|||||||| |||||||| |
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| T |
33384056 |
atgcaagtggctgcttg |
33384040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 3 - 180
Target Start/End: Complemental strand, 33395231 - 33395052
Alignment:
| Q |
3 |
gctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgg |
102 |
Q |
| |
|
||||||||||||||||| || | || |||||||||||||||| || ||||||| ||||| ||| ||| |||||| ||||||||||| |||||||| | |
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| T |
33395231 |
gctgacaagaaatccggtaggctagcagctgaaggaagaatcggtaaatacattgacgatgcacgcatctatgttctgattgaagtgaactgtgaaaccg |
33395132 |
T |
|
| Q |
103 |
actttatcgg--tagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttc |
180 |
Q |
| |
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||||| | || |||||||| | |||||||||||| ||| ||||||| |||||||| ||||||||||||||||||| |
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| T |
33395131 |
actttgttggcacagaagtgatagattcaaggagttggttgctgatctttcaatgcaataggctgcttgtccacaggttc |
33395052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 130
Target Start/End: Complemental strand, 33279068 - 33278972
Alignment:
| Q |
34 |
aaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa |
130 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||| ||||||||||||||||| || |||||||| |||||| || |||||| |||||||||| |
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|
| T |
33279068 |
aaggaagaattggtacatacattcacgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa |
33278972 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 127
Target Start/End: Complemental strand, 33280482 - 33280358
Alignment:
| Q |
3 |
gctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgg |
102 |
Q |
| |
|
||||||||||||||||||||| | ||||||||| ||||| ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || | |
|
|
| T |
33280482 |
gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactg |
33280383 |
T |
|
| Q |
103 |
actttatcggtagaagtgagaaatt |
127 |
Q |
| |
|
||||| | || |||||||||||||| |
|
|
| T |
33280382 |
acttttttggcagaagtgagaaatt |
33280358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 33293078 - 33293034
Alignment:
| Q |
123 |
aaattcaaggagtttgttcatgatcttgcaatgcaagttgctgct |
167 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
33293078 |
aaattcaaggagttggttaatgatcttgcaatgcaagttgctgct |
33293034 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 33293152 - 33293090
Alignment:
| Q |
2 |
cgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattc |
64 |
Q |
| |
|
|||||| ||||||||| |||||| || |||||||||||||| | |||||||||||||||||| |
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|
| T |
33293152 |
cgctgataagaaatccagaagactagcagctgaaggaagaattggtacatacattcacgattc |
33293090 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 17447802 - 17447981
Alignment:
| Q |
1 |
ccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaac |
100 |
Q |
| |
|
||||||| |||||||||||||||| | |||||||||||||||| |||||||||||||||| ||| ||| ||| |||||||||| |||| | |||||| |
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|
| T |
17447802 |
ccgctgataagaaatccggaagactggcagctgaaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactttgaaac |
17447901 |
T |
|
| Q |
101 |
ggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttc |
180 |
Q |
| |
|
|||||| | || ||||| |||| |||||||||||| ||| ||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
17447902 |
cgactttgttggcagaagggagagattcaaggagttggttgatgatcttgcaatgcaagtggctgcttttccacaggttc |
17447981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 2496 - 2315
Alignment:
| Q |
1 |
ccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata-cattcacgattcacacattagtgttctaattgaagtgaaatgtgaaa |
99 |
Q |
| |
|
||||||| ||||||||||| |||| || | ||||||||||||| |||||| || || ||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
2496 |
ccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaa |
2397 |
T |
|
| Q |
100 |
cggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgctt-gtccacaggttc |
180 |
Q |
| |
|
| |||||| | || |||||||||||||| |||||||| ||| | ||||||||||||||||| ||| || |||||||||||| |
|
|
| T |
2396 |
ccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc |
2315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 130
Target Start/End: Original strand, 15185 - 15281
Alignment:
| Q |
34 |
aaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa |
130 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||| ||||||||||||||||| || |||||||| |||||| || |||||| |||||||||| |
|
|
| T |
15185 |
aaggaagaattggtacatacattcacgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa |
15281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 13771 - 13895
Alignment:
| Q |
3 |
gctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgg |
102 |
Q |
| |
|
||||||||||||||||||||| | ||||||||| ||||| ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || | |
|
|
| T |
13771 |
gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactg |
13870 |
T |
|
| Q |
103 |
actttatcggtagaagtgagaaatt |
127 |
Q |
| |
|
||||| | || |||||||||||||| |
|
|
| T |
13871 |
acttttttggcagaagtgagaaatt |
13895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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