View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0744_low_3 (Length: 471)

Name: NF0744_low_3
Description: NF0744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0744_low_3
NF0744_low_3
[»] chr6 (25 HSPs)
chr6 (130-383)||(26062797-26063055)
chr6 (130-383)||(26082766-26083024)
chr6 (271-383)||(26146908-26147020)
chr6 (30-125)||(26063114-26063209)
chr6 (30-125)||(26083083-26083178)
chr6 (130-236)||(26147022-26147128)
chr6 (263-383)||(25489128-25489249)
chr6 (286-383)||(25548736-25548833)
chr6 (220-383)||(25453222-25453399)
chr6 (61-127)||(26147185-26147251)
chr6 (131-215)||(25489852-25489936)
chr6 (263-383)||(24771413-24771533)
chr6 (148-194)||(25548902-25548948)
chr6 (408-466)||(26059531-26059589)
chr6 (408-466)||(26079501-26079559)
chr6 (130-215)||(25453924-25454016)
chr6 (83-125)||(25454074-25454116)
chr6 (408-453)||(25486908-25486953)
chr6 (218-259)||(25548859-25548900)
chr6 (408-453)||(26146506-26146551)
chr6 (161-215)||(24772419-24772473)
chr6 (30-66)||(25454169-25454205)
chr6 (413-456)||(27703330-27703373)
chr6 (408-440)||(25583205-25583237)
chr6 (422-454)||(26962728-26962760)


Alignment Details
Target: chr6 (Bit Score: 178; Significance: 8e-96; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 130 - 383
Target Start/End: Complemental strand, 26063055 - 26062797
Alignment:
Q  130 gaatgcttcaacccatgtttccatgaatgtgtgtaactaattgccagttaaggcccttggtctatgttcagtagtagagagggacaatgatccaagcatc 229  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  26063055 gaatgcttcaacccttgtttccatgaatgtgtgtaactaattgccagttaaggcccttggtctatgttcagtagtagagagggacatcgatccaagcatc 26062956  T
Q  230 agtaccagcttacattctgaaagaaca----cccatccttcccacataggagtctaccaaattccagatggattgcatattgaagctcagacctgatcta 325  Q
    ||||||||||||||||||||||||  |     |||| |||||||||||||| ||||||||||||||||||||||| ||||||||| |||| |||||||||    
T  26062955 agtaccagcttacattctgaaagataattatgccattcttcccacataggactctaccaaattccagatggattggatattgaagttcaggcctgatcta 26062856  T
Q  326 gcg-aaaaaattgaggaaagcttttgtcaattcatttgactttgataaaaactagaata 383  Q
    ||| |||||||||||||||||||||||||||||||||||||  ||||||||| ||||||    
T  26062855 gcgaaaaaaattgaggaaagcttttgtcaattcatttgactcagataaaaaccagaata 26062797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 130 - 383
Target Start/End: Complemental strand, 26083024 - 26082766
Alignment:
Q  130 gaatgcttcaacccatgtttccatgaatgtgtgtaactaattgccagttaaggcccttggtctatgttcagtagtagagagggacaatgatccaagcatc 229  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  26083024 gaatgcttcaacccttgtttccatgaatgtgtgtaactaattgccagttaaggcccttggtctatgttcagtagtagagagggacatcgatccaagcatc 26082925  T
Q  230 agtaccagcttacattctgaaagaaca----cccatccttcccacataggagtctaccaaattccagatggattgcatattgaagctcagacctgatcta 325  Q
    ||||||||||||||||||||||||  |     |||| |||||||||||||| ||||||||||||||||||||||| ||||||||| |||| |||||||||    
T  26082924 agtaccagcttacattctgaaagataattatgccattcttcccacataggactctaccaaattccagatggattggatattgaagttcaggcctgatcta 26082825  T
Q  326 gcg-aaaaaattgaggaaagcttttgtcaattcatttgactttgataaaaactagaata 383  Q
    ||| |||||||||||||||||||||||||||||||||||||  ||||||||| ||||||    
T  26082824 gcgaaaaaaattgaggaaagcttttgtcaattcatttgactcagataaaaaccagaata 26082766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 271 - 383
Target Start/End: Complemental strand, 26147020 - 26146908
Alignment:
Q  271 ataggagtctaccaaattccagatggattgcatattgaagctcagacctgatctagcgaaaaaattgaggaaagcttttgtcaattcatttgactttgat 370  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26147020 ataggactctaccaaattccagatggattgcatattgaagctcagacctgatctagcgaaaaaattgaggaaagcttttgtgaattcatttgactttgat 26146921  T
Q  371 aaaaactagaata 383  Q
    |||||| ||||||    
T  26146920 aaaaaccagaata 26146908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 26063209 - 26063114
Alignment:
Q  30 cccactgcatagtttgtcttcttttataatgtgtaaaagaattatgcaattgaatatatttgcttatatctttatgcaattgaattttgatgaatg 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26063209 cccactgcatagtttgtcttcttttataatgtgtaaaagaattatgcaattgaatatatttgcttatatctttatgcaattgaattttgatgaatg 26063114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 26083178 - 26083083
Alignment:
Q  30 cccactgcatagtttgtcttcttttataatgtgtaaaagaattatgcaattgaatatatttgcttatatctttatgcaattgaattttgatgaatg 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26083178 cccactgcatagtttgtcttcttttataatgtgtaaaagaattatgcaattgaatatatttgcttatatctttatgcaattgaattttgatgaatg 26083083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 130 - 236
Target Start/End: Complemental strand, 26147128 - 26147022
Alignment:
Q  130 gaatgcttcaacccatgtttccatgaatgtgtgtaactaattgccagttaaggcccttggtctatgttcagtagtagagagggacaatgatccaagcatc 229  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||    
T  26147128 gaatgcttcaacccttgtttccatgaatgtgtgtaactaattgccagttaaggcccttggtctatgttctgtagtagagagggacatcgatccaagcatc 26147029  T
Q  230 agtacca 236  Q
    |||||||    
T  26147028 agtacca 26147022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 263 - 383
Target Start/End: Complemental strand, 25489249 - 25489128
Alignment:
Q  263 cttcccacataggagtctaccaaattccagatggattgcatattgaagctcagacctgatctagcgaa-aaaattgaggaaagcttttgtcaattcattt 361  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  25489249 cttcccacataggactctaccaaattccagatggattggatattgaagttcaggcctgatctagcgaaaaaaattgaggaaagcttttgtcaattcattt 25489150  T
Q  362 gactttgataaaaactagaata 383  Q
    ||||  ||||||||| ||||||    
T  25489149 gactcagataaaaaccagaata 25489128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 286 - 383
Target Start/End: Complemental strand, 25548833 - 25548736
Alignment:
Q  286 attccagatggattgcatattgaagctcagacctgatctagcgaaaaaattgaggaaagcttttgtcaattcatttgactttgataaaaactagaata 383  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25548833 attccagatggattgaatattgaagctcagacctgatctagcgaaaaaaatgaggaaagcttttgtcaattcatttgactttgataaaaaccagaata 25548736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 220 - 383
Target Start/End: Complemental strand, 25453399 - 25453222
Alignment:
Q  220 tccaagcatcagtaccagcttacattctgaaagaacaccc--------------atccttcccacataggagtctaccaaattccagatggattgcatat 305  Q
    |||| |||||||||||||||||||||||||||||||||||              || ||||||| |||||| ||||||||||||||||||||||| ||||    
T  25453399 tccacgcatcagtaccagcttacattctgaaagaacaccctcactaattatgccattcttcccatataggactctaccaaattccagatggattggatat 25453300  T
Q  306 tgaagctcagacctgatctagcgaaaaaattgaggaaagcttttgtcaattcatttgactttgataaaaactagaata 383  Q
    ||||| ||||  |||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||| ||||||    
T  25453299 tgaagttcaggtctgatctagcaaaaaaattgaggaaagcttttgtcaattcatttgactcagataaaaaccagaata 25453222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 26147251 - 26147185
Alignment:
Q  61 tgtaaaagaattatgcaattgaatatatttgcttatatctttatgcaattgaattttgatgaatgga 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26147251 tgtaaaagaattatgcaattgaatatatttgcttatatctttatgcaattgaattttgatgaatgga 26147185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 25489936 - 25489852
Alignment:
Q  131 aatgcttcaacccatgtttccatgaatgtgtgtaactaattgccagttaaggcccttggtctatgttcagtagtagagagggaca 215  Q
    ||||||||||| | ||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||| |||||||||||    
T  25489936 aatgcttcaacacttgtttccatgaatgtgtgtaactaatcaccagttaaggcccttggtctatgttcaatagaagagagggaca 25489852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 263 - 383
Target Start/End: Complemental strand, 24771533 - 24771413
Alignment:
Q  263 cttcccacataggagtctaccaaattccagatggattgcatattgaagctcagacctgatctagcgaaaaaattgaggaaagcttttgtcaattcatttg 362  Q
    |||||||||||||| | ||||||| |||| |||||||| || |||||| |||||| | |||||||  ||||||||||||||||||||||||||||| |||    
T  24771533 cttcccacataggactttaccaaactccacatggattggattttgaagttcagacattatctagcacaaaaattgaggaaagcttttgtcaattcacttg 24771434  T
Q  363 actttgataaaaactagaata 383  Q
    |   |||||||||| ||||||    
T  24771433 atgctgataaaaaccagaata 24771413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 25548948 - 25548902
Alignment:
Q  148 ttccatgaatgtgtgtaactaattgccagttaaggcccttggtctat 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  25548948 ttccatgaatgtgtgtaactaattgccagttaaggcccttggtctat 25548902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 408 - 466
Target Start/End: Complemental strand, 26059589 - 26059531
Alignment:
Q  408 atctctctttcatcttgtgcactgcttaatatttcaatctcatccccatctgtgctgct 466  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  26059589 atctttctttcatcttgtgcactgcttaatatttcaatctcatccccatccgtgttgct 26059531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 408 - 466
Target Start/End: Complemental strand, 26079559 - 26079501
Alignment:
Q  408 atctctctttcatcttgtgcactgcttaatatttcaatctcatccccatctgtgctgct 466  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  26079559 atctttctttcatcttgtgcactgcttaatatttcaatctcatccccatccgtgttgct 26079501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 25454016 - 25453924
Alignment:
Q  130 gaatgcttcaacccatgtttccatgaatgtgtgtaacta-------attgccagttaaggcccttggtctatgttcagtagtagagagggaca 215  Q
    |||||||||||| || |||||||||||||||||||||||       ||  ||||||||||||||||||||||||||| ||| |||||||||||    
T  25454016 gaatgcttcaacacacgtttccatgaatgtgtgtaactattaactaatcaccagttaaggcccttggtctatgttcaatagaagagagggaca 25453924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 25454116 - 25454074
Alignment:
Q  83 atatatttgcttatatctttatgcaattgaattttgatgaatg 125  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  25454116 atatatttacttatatctttatgcaattgaattttgatgaatg 25454074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 408 - 453
Target Start/End: Complemental strand, 25486953 - 25486908
Alignment:
Q  408 atctctctttcatcttgtgcactgcttaatatttcaatctcatccc 453  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||    
T  25486953 atctttctttcatcttgcgcactgcttaatatttcaatctcatccc 25486908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 25548900 - 25548859
Alignment:
Q  218 gatccaagcatcagtaccagcttacattctgaaagaacaccc 259  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  25548900 gatccaagcatcagtaccaacttacattctgaaagaacaccc 25548859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 408 - 453
Target Start/End: Complemental strand, 26146551 - 26146506
Alignment:
Q  408 atctctctttcatcttgtgcactgcttaatatttcaatctcatccc 453  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||    
T  26146551 atctttctttcatcttgcgcactgcttaatatttcaatctcatccc 26146506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 24772473 - 24772419
Alignment:
Q  161 tgtaactaattgccagttaaggcccttggtctatgttcagtagtagagagggaca 215  Q
    ||||||||||  ||||| ||||||||||||||||||||| || ||||||||||||    
T  24772473 tgtaactaatcaccagtcaaggcccttggtctatgttcaatactagagagggaca 24772419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 25454205 - 25454169
Alignment:
Q  30 cccactgcatagtttgtcttcttttataatgtgtaaa 66  Q
    ||||||||||||| |||||||||||||||||||||||    
T  25454205 cccactgcatagtctgtcttcttttataatgtgtaaa 25454169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 456
Target Start/End: Original strand, 27703330 - 27703373
Alignment:
Q  413 tctttcatcttgtgcactgcttaatatttcaatctcatccccat 456  Q
    |||||||||||||||| || |||| |||||||||||||||||||    
T  27703330 tctttcatcttgtgcattgtttaaaatttcaatctcatccccat 27703373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 440
Target Start/End: Complemental strand, 25583237 - 25583205
Alignment:
Q  408 atctctctttcatcttgtgcactgcttaatatt 440  Q
    |||| ||||||||||||||||||||||||||||    
T  25583237 atctttctttcatcttgtgcactgcttaatatt 25583205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 454
Target Start/End: Complemental strand, 26962760 - 26962728
Alignment:
Q  422 ttgtgcactgcttaatatttcaatctcatcccc 454  Q
    |||||||||||||||||||||| ||||||||||    
T  26962760 ttgtgcactgcttaatatttcagtctcatcccc 26962728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3173 times since January 2019
Visitors: 4805