View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0744_low_30 (Length: 240)
Name: NF0744_low_30
Description: NF0744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0744_low_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 39287550 - 39287671
Alignment:
| Q |
1 |
tcaataagcattgcatttgttggttgatcaagccaagaaggccagcaaataacaggcacaccagttatcaatgtctcaagtgttgagttccaaccacaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39287550 |
tcaataagcattgcatttgttggttgatcaagccaagaaggccagcaaataacaggcacaccagttatcaatgtctcaagtgttgagttccaaccacaat |
39287649 |
T |
|
| Q |
101 |
gacttagaaaacaagcaacagc |
122 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
39287650 |
gacttagaaaacaagcaacagc |
39287671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 39491483 - 39491364
Alignment:
| Q |
3 |
aataagcattgcatttgttggttgatcaagccaagaaggccagcaaataacaggcacaccagttatcaatgtctcaagtgttgagttccaaccacaatga |
102 |
Q |
| |
|
||||||||| |||||||||||||| ||| |||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39491483 |
aataagcatagcatttgttggttggtcagtccaagatggccaaccaataacaggcacaccagttatcaatgtctcaagtgttgagttccaaccacaatga |
39491384 |
T |
|
| Q |
103 |
cttagaaaacaagcaacagc |
122 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
39491383 |
cttagaaaacaagcaacagc |
39491364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5409 times since January 2019
Visitors: 4850