View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0744_low_33 (Length: 231)

Name: NF0744_low_33
Description: NF0744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0744_low_33
NF0744_low_33
[»] chr3 (5 HSPs)
chr3 (2-222)||(43201912-43202135)
chr3 (28-215)||(28592605-28592792)
chr3 (24-136)||(13477077-13477189)
chr3 (25-130)||(51469206-51469311)
chr3 (24-52)||(37987253-37987281)
[»] chr7 (2 HSPs)
chr7 (24-222)||(48717312-48717507)
chr7 (24-76)||(48718172-48718224)
[»] chr8 (2 HSPs)
chr8 (19-171)||(14753938-14754086)
chr8 (35-136)||(3043273-3043374)
[»] scaffold0022 (1 HSPs)
scaffold0022 (72-154)||(148442-148523)
[»] chr4 (2 HSPs)
chr4 (72-154)||(12919653-12919734)
chr4 (24-52)||(40496081-40496109)
[»] chr1 (2 HSPs)
chr1 (33-157)||(25084536-25084659)
chr1 (23-51)||(37576942-37576970)
[»] chr5 (1 HSPs)
chr5 (24-135)||(33470400-33470511)
[»] chr2 (1 HSPs)
chr2 (48-95)||(45632494-45632541)
[»] scaffold0418 (1 HSPs)
scaffold0418 (24-52)||(5925-5953)


Alignment Details
Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 43201912 - 43202135
Alignment:
Q  2 atattaagagtttgggtcactcggtgtcaatggattcgttgacaccaaattatagccgtcctttatttcaatcttaatggctctcatttattcagctaat 101  Q
    |||||| ||||| || ||| |||||||||||||||| ||||||||||||| ||||||||||||||||| || |||| || ||||||||||||||||||||    
T  43201912 atattaggagttaggatcattcggtgtcaatggatttgttgacaccaaatcatagccgtcctttattttaaacttagtgactctcatttattcagctaat 43202011  T
Q  102 tgttcatgtggggactcttcaaagaaaaacatatcgctgctctca---tcttcttcttcttgaagggactcatgtttatgttcttcttgcagacaaatta 198  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||   |||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  43202012 tgtttatgtgaggactcttcaaagaaaaacatatcgctgctctcatcttcttcttcttcttgaagggattcacgtttatgttcttcttgcagacaaatta 43202111  T
Q  199 cataattgatcatccctatgctac 222  Q
    ||||||||||||||| | ||||||    
T  43202112 cataattgatcatccatttgctac 43202135  T

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Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 28 - 215
Target Start/End: Complemental strand, 28592792 - 28592605
Alignment:
Q  28 tcaatggattcgtt-gacaccaaattatagccgtcctttatttcaatcttaatggctctcatttattcagctaattgttcatgtggggactcttcaaaga 126  Q
    |||||||||||||| |||||||||| ||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28592792 tcaatggattcgtttgacaccaaatcataaccgtcatttattttaatcttaatggctctcatttattcagctaattgttcacgtggggactcttcaaaga 28592693  T
Q  127 aaaacatat------cgctgctctcatcttcttcttcttgaagggactcatgtttatgttcttcttgcagacaaattacataattgatcatccct 215  Q
    ||| |||||      || ||||||||   |||||||||||||| |||||||||||||||||||    ||||||||||||| ||| ||||||||||    
T  28592692 aaagcatatataccacgttgctctca---tcttcttcttgaagtgactcatgtttatgttctt----cagacaaattacacaatcgatcatccct 28592605  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 13477077 - 13477189
Alignment:
Q  24 ggtgtcaatggattcgttgacaccaaattatagccgtcctttatttcaatcttaatggctctcatttattcagctaattgttcatgtggggactcttcaa 123  Q
    |||||||| | |||| ||||||||||||  || || | ||||||||  ||||||||||||| ||||||||||  |||||||| |||||||||||||||||    
T  13477077 ggtgtcaacgaattcattgacaccaaatcctaaccattctttattttgatcttaatggctcccatttattcacttaattgttaatgtggggactcttcaa 13477176  T
Q  124 agaaaaacatatc 136  Q
    |||||||||||||    
T  13477177 agaaaaacatatc 13477189  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 51469311 - 51469206
Alignment:
Q  25 gtgtcaatggattcgttgacaccaaattatagccgtcctttatttcaatcttaatggctctcatttattcagctaa-ttgttcatgtggggactcttcaa 123  Q
    ||||||| |||||||||||||||||||  ||||| | |||| ||| |||||||||||||| ||||||||| || || ||||||| ||||| |||||||||    
T  51469311 gtgtcaacggattcgttgacaccaaatcttagccattctttgttttaatcttaatggctcacatttattc-gcgaacttgttcacgtgggaactcttcaa 51469213  T
Q  124 agaaaaa 130  Q
    |||||||    
T  51469212 agaaaaa 51469206  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 37987253 - 37987281
Alignment:
Q  24 ggtgtcaatggattcgttgacaccaaatt 52  Q
    |||||||||||||||||||||||||||||    
T  37987253 ggtgtcaatggattcgttgacaccaaatt 37987281  T

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Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 24 - 222
Target Start/End: Original strand, 48717312 - 48717507
Alignment:
Q  24 ggtgtcaatggattcgttgacaccaaattatagccgtcctttatttcaatcttaatggctctcatttattcagctaattgttcatgtggggactcttcaa 123  Q
    ||||||||||| |||||||||||||| | |||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  48717312 ggtgtcaatgggttcgttgacaccaactcatagccgtccttcattttaatcttagtggctctcatttattcagctaattgttcatgtggggactcttgaa 48717411  T
Q  124 agaaaaacatatcgctgctctcatcttcttcttcttgaagggactcatgtttatgttcttcttgcagacaaattacataattgatcatccctatgctac 222  Q
    ||||||||||||||||| |||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  48717412 agaaaaacatatcgctgttctca---tcttcttcttgaagggactcatgtttatgttcttcttgcagacaaattacataattgatcatccatttgctac 48717507  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 48718224 - 48718172
Alignment:
Q  24 ggtgtcaatggattcgttgacaccaaattatagccgtcctttatttcaatctt 76  Q
    ||||||||||||| |||||||||||||| ||||||||| ||||||| ||||||    
T  48718224 ggtgtcaatggatccgttgacaccaaatcatagccgtcgtttattttaatctt 48718172  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 171
Target Start/End: Complemental strand, 14754086 - 14753938
Alignment:
Q  19 cactcggtgtcaatggattcgttgacaccaaattatagccgtcctttatttcaatcttaatggctctcatttattcagctaattgttcatgtggggactc 118  Q
    |||| |||||||| ||||| |||||||| ||||  ||||||| |||| ||| |||||||||||||| ||||||||||   | ||||||| ||||||||||    
T  14754086 cactaggtgtcaacggatttgttgacactaaatcctagccgttctttgttttaatcttaatggctcacatttattcacgaatttgttcacgtggggactc 14753987  T
Q  119 ttcaaagaaaaacatatcgctgctctcatcttcttcttcttgaagggactcat 171  Q
    ||||||||||||||||   |||| ||| || ||||||||||||||| ||||||    
T  14753986 ttcaaagaaaaacata---ctgccctc-tcatcttcttcttgaaggcactcat 14753938  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 35 - 136
Target Start/End: Original strand, 3043273 - 3043374
Alignment:
Q  35 attcgttgacaccaaattatagccgtcctttatttcaatcttaatggctctcatttattcagctaattgttcatgtggggactcttcaaagaaaaacata 134  Q
    |||| ||||||||||||  || || | ||||||||  ||||||||||||| ||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  3043273 attcattgacaccaaatcctaaccattctttattttgatcttaatggctcccatttattcacttaattgttaatgtggggactcttcaaagaaaaacata 3043372  T
Q  135 tc 136  Q
    ||    
T  3043373 tc 3043374  T

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Target: scaffold0022 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 154
Target Start/End: Original strand, 148442 - 148523
Alignment:
Q  72 atcttaatggctctcatttattcagctaattgttcatgtggggactcttcaaagaaaaacatatcgctgctctcatcttcttc 154  Q
    ||||||||||||| ||||||||||  | |||||||| |||||||||||||||||||||||||||| |  ||||||||||||||    
T  148442 atcttaatggctcacatttattcacttgattgttcaggtggggactcttcaaagaaaaacatatcac-actctcatcttcttc 148523  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 154
Target Start/End: Original strand, 12919653 - 12919734
Alignment:
Q  72 atcttaatggctctcatttattcagctaattgttcatgtggggactcttcaaagaaaaacatatcgctgctctcatcttcttc 154  Q
    |||||||||| || ||||||||||  ||||| || | |||||||||||||||||||||||||||| |  ||||||||||||||    
T  12919653 atcttaatggttcacatttattcaattaattattaacgtggggactcttcaaagaaaaacatatcac-actctcatcttcttc 12919734  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 40496109 - 40496081
Alignment:
Q  24 ggtgtcaatggattcgttgacaccaaatt 52  Q
    |||||||||||||||||||||||||||||    
T  40496109 ggtgtcaatggattcgttgacaccaaatt 40496081  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 157
Target Start/End: Original strand, 25084536 - 25084659
Alignment:
Q  33 ggattcgttgacaccaaattatagccgtcctttatttcaatcttaatggctctcatttattcagctaattgttcatgtggggactcttcaaagaaaaaca 132  Q
    |||| ||||||||||||||  || || | |||| |||  ||||||||||| | |||||||| |  | |||||| | ||| ||||||||||||||||||||    
T  25084536 ggatccgttgacaccaaatcctaaccattctttgttttgatcttaatggcccacatttatttacttgattgttaaggtgtggactcttcaaagaaaaaca 25084635  T
Q  133 tatcgctgctctcatcttcttcttc 157  Q
    |||| |  |||||||||||||||||    
T  25084636 tatcac-actctcatcttcttcttc 25084659  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 51
Target Start/End: Original strand, 37576942 - 37576970
Alignment:
Q  23 cggtgtcaatggattcgttgacaccaaat 51  Q
    |||||||||||||||||||||||||||||    
T  37576942 cggtgtcaatggattcgttgacaccaaat 37576970  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 135
Target Start/End: Original strand, 33470400 - 33470511
Alignment:
Q  24 ggtgtcaatggattcgttgacaccaaattatagccgtcctttatttcaatcttaatggctctcatttattcagctaattgttcatgtggggactcttcaa 123  Q
    |||||||| | ||| |||||||||||||   | || | ||||||||  ||||||||||||| ||||||||||  |||||||| |  ||| ||||||| ||    
T  33470400 ggtgtcaacgaatttgttgacaccaaatccaaaccattctttattttgatcttaatggctcccatttattcacttaattgttaacatggagactctttaa 33470499  T
Q  124 agaaaaacatat 135  Q
    ||||||||||||    
T  33470500 agaaaaacatat 33470511  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 45632494 - 45632541
Alignment:
Q  48 aaattatagccgtcctttatttcaatcttaatggctctcatttattca 95  Q
    |||| ||||||||||||||||| ||||||| ||||| |||||||||||    
T  45632494 aaatcatagccgtcctttattttaatcttagtggctatcatttattca 45632541  T

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Target: scaffold0418 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 5925 - 5953
Alignment:
Q  24 ggtgtcaatggattcgttgacaccaaatt 52  Q
    |||||||||||||||||||||||||||||    
T  5925 ggtgtcaatggattcgttgacaccaaatt 5953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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