View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0744_low_34 (Length: 228)
Name: NF0744_low_34
Description: NF0744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0744_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 54 - 151
Target Start/End: Original strand, 30878565 - 30878662
Alignment:
| Q |
54 |
gttacgaataaaaagccacatattatggtgatatactagagctagatatctaaagagattctagcttaatttgtccatgcatgcatgacacctatgct |
151 |
Q |
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| T |
30878565 |
gttacgaataaaaagccacatattatggtgataaactagagctagctatctaaagagattctagcttaatttgtccatgcatgcatgacacctatgct |
30878662 |
T |
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Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 151
Target Start/End: Original strand, 30854384 - 30854463
Alignment:
| Q |
70 |
cacatattatggtgatatactagagctagatatctaaagagattctagcttaatttgtccatgcatgcatgacacctatgct |
151 |
Q |
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| T |
30854384 |
cacatattatggtgatagactaaagctagctgtctaaaga--ttccagcttaatttgtccatgcatgcatgacacctatgct |
30854463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 30878523 - 30878554
Alignment:
| Q |
7 |
ataaccaaccaaattcaaaacagaaaagaagg |
38 |
Q |
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| T |
30878523 |
ataaccaaccaaattcaaaacagaaaagaagg |
30878554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 15064297 - 15064218
Alignment:
| Q |
70 |
cacatattatggtgatatactagagctagatatctaaagagattctagcttaatttgtccatgcatgcatgacacctatgct |
151 |
Q |
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| T |
15064297 |
cacatattatggagatatactagagctagttgttga--gagattctagcttaatttgtccatgcatgcattacacctatgct |
15064218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 15070984 - 15070940
Alignment:
| Q |
107 |
agagattctagcttaatttgtccatgcatgcatgacacctatgct |
151 |
Q |
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| T |
15070984 |
agagattctagcttaatttgtccatgcatgcataacacctatgct |
15070940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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