View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0744_low_5 (Length: 442)

Name: NF0744_low_5
Description: NF0744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0744_low_5
NF0744_low_5
[»] chr7 (4 HSPs)
chr7 (116-356)||(44267146-44267386)
chr7 (179-356)||(6997533-6997710)
chr7 (2-124)||(44266426-44266548)
chr7 (2-51)||(6997709-6997758)
[»] chr2 (2 HSPs)
chr2 (178-356)||(38502983-38503161)
chr2 (2-119)||(38503159-38503276)
[»] chr4 (8 HSPs)
chr4 (178-356)||(46596948-46597126)
chr4 (182-356)||(6678897-6679071)
chr4 (178-341)||(22505884-22506047)
chr4 (2-119)||(22505769-22505886)
chr4 (2-119)||(6679073-6679190)
chr4 (2-129)||(50959606-50959737)
chr4 (2-119)||(46596833-46596950)
chr4 (242-356)||(50959495-50959609)
[»] chr5 (4 HSPs)
chr5 (178-356)||(18380-18558)
chr5 (178-341)||(21291782-21291945)
chr5 (2-119)||(18556-18673)
chr5 (2-119)||(21291943-21292060)
[»] chr8 (2 HSPs)
chr8 (2-119)||(43733852-43733969)
chr8 (178-216)||(43733816-43733854)
[»] chr6 (1 HSPs)
chr6 (143-265)||(28031522-28031644)


Alignment Details
Target: chr7 (Bit Score: 149; Significance: 2e-78; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 116 - 356
Target Start/End: Original strand, 44267146 - 44267386
Alignment:
Q  116 gcctgaaacgcagagaaaaaactgacgaaaaatcaatcaacttcaaataaatctccaaacgacctctaaaaagtgggacccaagtgtttttgatggtccc 215  Q
    ||||||||| | |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  44267146 gcctgaaacaccgagaaaaaactgacgaaaaaccaatcaacttcaaagaaatctccaaacgacctctaaaaagtgggacccaagtgttgttgacggtccc 44267245  T
Q  216 agacaacacagaacagcaaggtgagtcagatgatgacagtggcgattgaaagcagcgggaaggcggcgtgttgattgacgtttgatggaaaaaagaagat 315  Q
    | ||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||   |||| ||||    
T  44267246 aaacaacacagaacaacaaggtgagtcaaatgatgacagtggcgattgaaagccgcgggaaggcggcgcgtcgattgacgtttgatggcggaaagcagat 44267345  T
Q  316 tgacgccctctgattctaattccagatcgtgtctctatgtc 356  Q
     |  ||| |||||||||||||||||| || || ||||||||    
T  44267346 cggtgccgtctgattctaattccagagcgcgtgtctatgtc 44267386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 179 - 356
Target Start/End: Complemental strand, 6997710 - 6997533
Alignment:
Q  179 ctctaaaaagtgggacccaagtgtttttgatggtcccagacaacacagaacagcaaggtgagtcagatgatgacagtggcgattgaaagcagcgggaagg 278  Q
    ||||||||||||||||||||||||| ||||||| || | ||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||    
T  6997710 ctctaaaaagtgggacccaagtgttgttgatggccctaaacaacacagaagagcaaggtgagtcagatgatgacagtggtgactgaaagcagcgggaagg 6997611  T
Q  279 cggcgtgttgattgacgtttgatggaaaaaagaagattgacgccctctgattctaattccagatcgtgtctctatgtc 356  Q
    ||||| |||||||||||||| ||||   |||| |||| |  ||  |||||||||||||||||| || || ||||||||    
T  6997610 cggcgcgttgattgacgtttaatggcggaaagcagatcggtgcagtctgattctaattccagagcgcgtgtctatgtc 6997533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 2 - 124
Target Start/End: Original strand, 44266426 - 44266548
Alignment:
Q  2 catcataccactaaaccaaaaacctttgaatggcatccaaagacaaatctgcagcaaccaagatgaaacacaacaaaagtggcagactaaagtgagcaga 101  Q
    ||||||||||||||||||| |||||||||||| | ||||||||||||| || ||||||||||||||||||| |||||||||||||| |||||||||||||    
T  44266426 catcataccactaaaccaacaacctttgaatgacgtccaaagacaaatatgtagcaaccaagatgaaacacgacaaaagtggcagattaaagtgagcaga 44266525  T
Q  102 gaattacccacgaagcctgaaac 124  Q
    |||| ||||||||||||||||||    
T  44266526 gaatgacccacgaagcctgaaac 44266548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 6997758 - 6997709
Alignment:
Q  2 catcataccactaaaccaaaaacctttgaatggcatccaaagacaaatct 51  Q
    |||||||||||||||| ||||||||||||||| | |||||||||||||||    
T  6997758 catcataccactaaacaaaaaacctttgaatgacgtccaaagacaaatct 6997709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 5e-63; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 178 - 356
Target Start/End: Complemental strand, 38503161 - 38502983
Alignment:
Q  178 cctctaaaaagtgggacccaagtgtttttgatggtcccagacaacacagaacagcaaggtgagtcagatgatgacagtggcgattgaaagcagcgggaag 277  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38503161 cctctaaaaagtgggacccaagtgttgttgatggtcccaaacaacacagaacagcaaggtgagtcaaatgatgacagtggcgattgaaagcagcgggaag 38503062  T
Q  278 gcggcgtgttgattgacgtttgatggaaaaaagaagattgacgccctctgattctaattccagatcgtgtctctatgtc 356  Q
    || |||||| |||||||||||||||| | |||| |||| | |||| |||||||||||||||||| || || ||||||||    
T  38503061 gcagcgtgtcgattgacgtttgatggcagaaagcagatcggcgccgtctgattctaattccagagcgcgtgtctatgtc 38502983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 38503276 - 38503159
Alignment:
Q  2 catcataccactaaaccaaaaacctttgaatggcatccaaagacaaatctgcagcaaccaagatgaaacacaacaaaagtggcagactaaagtgagcaga 101  Q
    ||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||   ||    
T  38503276 catcataccactaaaccaaaaccctttgaatgacgtccaaagacaaatctgcagcaaccaagatgaatcacaacaaaagtggcagactgaagtgacttga 38503177  T
Q  102 gaattacccacgaagcct 119  Q
    |||| |||||||||||||    
T  38503176 gaatgacccacgaagcct 38503159  T

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Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 178 - 356
Target Start/End: Original strand, 46596948 - 46597126
Alignment:
Q  178 cctctaaaaagtgggacccaagtgtttttgatggtcccagacaacacagaacagcaaggtgagtcagatgatgacagtggcgattgaaagcagcgggaag 277  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46596948 cctctaaaaagtgggacccaagtgttgttgatggtcccaaacaacacagaacagcaaggtgagtcagatgatgacagtggcgattgaaagcagcgggaag 46597047  T
Q  278 gcggcgtgttgattgacgtttgatggaaaaaagaagattgacgccctctgattctaattccagatcgtgtctctatgtc 356  Q
    || ||||||  |||||||||||||||   |||| |||| | |||| |||||||||||||||||| || || ||||||||    
T  46597048 gcagcgtgtcaattgacgtttgatggcggaaagcagatcggcgccgtctgattctaattccagagcgcgtgtctatgtc 46597126  T

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Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 182 - 356
Target Start/End: Complemental strand, 6679071 - 6678897
Alignment:
Q  182 taaaaagtgggacccaagtgtttttgatggtcccagacaacacagaacagcaaggtgagtcagatgatgacagtggcgattgaaagcagcgggaaggcgg 281  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||      
T  6679071 taaaaagtgggacccaagtgttgttgatggtcccaaacaacacagaacagcaaggtgagttagatgatgacagtggcgattgaaagcagcgggaaggcaa 6678972  T
Q  282 cgtgttgattgacgtttgatggaaaaaagaagattgacgccctctgattctaattccagatcgtgtctctatgtc 356  Q
    | ||| ||||||||||||||||   |||| |||| | |||| |||||||||||||||||| || || ||||||||    
T  6678971 catgtcgattgacgtttgatggcggaaagcagatcggcgccgtctgattctaattccagagcgcgtgtctatgtc 6678897  T

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Target: chr4; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 178 - 341
Target Start/End: Original strand, 22505884 - 22506047
Alignment:
Q  178 cctctaaaaagtgggacccaagtgtttttgatggtcccagacaacacagaacagcaaggtgagtcagatgatgacagtggcgattgaaagcagcgggaag 277  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  22505884 cctctaaaaagtgggacccaagtgttgttgatggtcccaaacaacacagaacagcaaggtgagtaagatgatgacagtggcgattgaaagcaacgggaag 22505983  T
Q  278 gcggcgtgttgattgacgtttgatggaaaaaagaagattgacgccctctgattctaattccaga 341  Q
    ||  | |||  |||||||||||||||   |||| |||| | |||| ||||||||||||||||||    
T  22505984 gcaacatgtcaattgacgtttgatggcggaaagcagatcggcgccgtctgattctaattccaga 22506047  T

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Target: chr4; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 2 - 119
Target Start/End: Original strand, 22505769 - 22505886
Alignment:
Q  2 catcataccactaaaccaaaaacctttgaatggcatccaaagacaaatctgcagcaaccaagatgaaacacaacaaaagtggcagactaaagtgagcaga 101  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||    
T  22505769 catcataccactaaaccaaaaacctttgaatgacgtccaaagacaaatctgcagaaaccaagatgaatcacaacaaaagtggcagactaaagtgaccaga 22505868  T
Q  102 gaattacccacgaagcct 119  Q
    |||| |||||||||||||    
T  22505869 gaatgacccacgaagcct 22505886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 6679190 - 6679073
Alignment:
Q  2 catcataccactaaaccaaaaacctttgaatggcatccaaagacaaatctgcagcaaccaagatgaaacacaacaaaagtggcagactaaagtgagcaga 101  Q
    ||||||||||||||||||||||||| |||||| | ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||    
T  6679190 catcataccactaaaccaaaaacctctgaatgacgtccaacgacaaatctgcggcaaccaagatgaatcacaacaaaagtggcagactaaagtgaccaga 6679091  T
Q  102 gaattacccacgaagcct 119  Q
    |||| |||||||||||||    
T  6679090 gaatgacccacgaagcct 6679073  T

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Target: chr4; HSP #6
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 2 - 129
Target Start/End: Complemental strand, 50959737 - 50959606
Alignment:
Q  2 catcataccactaaaccaaaaaccttt-gaatggcatccaaagacaaatctgcagcaaccaagatgaaacacaa-caaaagt-ggcagact-aaagtgag 97  Q
    ||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||  |||||| |||||||| ||||||||    
T  50959737 catcataccactaaaccaaaaacctttagaatgacgtccaaagacaaatctgcagcaaccaagatgaaacacaataaaaagtaggcagactaaaagtgag 50959638  T
Q  98 cagagaattacccacgaagcctgaaacgcaga 129  Q
    |||||||| |||||||||||||||||||||||    
T  50959637 cagagaatgacccacgaagcctgaaacgcaga 50959606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 2 - 119
Target Start/End: Original strand, 46596833 - 46596950
Alignment:
Q  2 catcataccactaaaccaaaaacctttgaatggcatccaaagacaaatctgcagcaaccaagatgaaacacaacaaaagtggcagactaaagtgagcaga 101  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||| ||||    
T  46596833 catcataccactaaaccaaaaacctttgaatgacgtccaaagacaaatctgcagaaaccaagatgaatcacaagaaaagtggcagactaaagtgaccaga 46596932  T
Q  102 gaattacccacgaagcct 119  Q
    | || ||||| |||||||    
T  46596933 gtatgacccatgaagcct 46596950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 242 - 356
Target Start/End: Complemental strand, 50959609 - 50959495
Alignment:
Q  242 cagatgatgacagtggcgattgaaagcagcgggaaggcggcgtgttgattgacgtttgatggaaaaaagaagattgacgccctctgattctaattccaga 341  Q
    ||||||||||| |||  ||||||||||||||||||||| ||| || |||||| |||||||||   |||| |||| | |||  ||||||||||||||||||    
T  50959609 cagatgatgacggtgatgattgaaagcagcgggaaggcagcgcgtcgattgatgtttgatggcggaaagcagatcggcgctgtctgattctaattccaga 50959510  T
Q  342 tcgtgtctctatgtc 356  Q
     || || ||||||||    
T  50959509 gcgcgtgtctatgtc 50959495  T

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Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 178 - 356
Target Start/End: Complemental strand, 18558 - 18380
Alignment:
Q  178 cctctaaaaagtgggacccaagtgtttttgatggtcccagacaacacagaacagcaaggtgagtcagatgatgacagtggcgattgaaagcagcgggaag 277  Q
    |||||||||||||||||||||||||| |||||| ||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  18558 cctctaaaaagtgggacccaagtgttgttgatgatcccaaacaacacagaacagcgaggtgagtcggatgatgacagtggcgattgaaagcagcgggaag 18459  T
Q  278 gcggcgtgttgattgacgtttgatggaaaaaagaagattgacgccctctgattctaattccagatcgtgtctctatgtc 356  Q
    || |||||| ||||||||||||||||   |||| |||| |  ||| |||||||||||||||||| || || ||||||||    
T  18458 gcagcgtgtcgattgacgtttgatggcggaaagcagatcggggccgtctgattctaattccagagcgcgtgtctatgtc 18380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 178 - 341
Target Start/End: Complemental strand, 21291945 - 21291782
Alignment:
Q  178 cctctaaaaagtgggacccaagtgtttttgatggtcccagacaacacagaacagcaaggtgagtcagatgatgacagtggcgattgaaagcagcgggaag 277  Q
    |||||||||||||||||||||||||| |||||| ||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||| || |||    
T  21291945 cctctaaaaagtgggacccaagtgttgttgatgatcccaaacaacacagaacaacaaggtgagtcagatgatgacaatggcgattgaaagcagtggtaag 21291846  T
Q  278 gcggcgtgttgattgacgtttgatggaaaaaagaagattgacgccctctgattctaattccaga 341  Q
    || || ||| ||||||||||||||||   |||| |||| |  ||| ||||||||||||||||||    
T  21291845 gcagcatgtcgattgacgtttgatggcggaaagcagatcggggccgtctgattctaattccaga 21291782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 18673 - 18556
Alignment:
Q  2 catcataccactaaaccaaaaacctttgaatggcatccaaagacaaatctgcagcaaccaagatgaaacacaacaaaagtggcagactaaagtgagcaga 101  Q
    ||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||    
T  18673 catcataccactaaaccaaaaacctttcaatgacgtccaaagacaaatctgcagcaaccaagatgaatcacaacaaaagtggcagactaaagagaccaga 18574  T
Q  102 gaattacccacgaagcct 119  Q
    |||| |||||||||||||    
T  18573 gaatgacccacgaagcct 18556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 21292060 - 21291943
Alignment:
Q  2 catcataccactaaaccaaaaacctttgaatggcatccaaagacaaatctgcagcaaccaagatgaaacacaacaaaagtggcagactaaagtgagcaga 101  Q
    ||||||||||||||||| ||||||||||| || | |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||    
T  21292060 catcataccactaaacctaaaacctttgattgacgtccaaagacaaatctgcagcaaccaagatgaatcacaacaaaagtggtagactaaagtgaccaga 21291961  T
Q  102 gaattacccacgaagcct 119  Q
    ||||||||||||||||||    
T  21291960 gaattacccacgaagcct 21291943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 43733969 - 43733852
Alignment:
Q  2 catcataccactaaaccaaaaacctttgaatggcatccaaagacaaatctgcagcaaccaagatgaaacacaacaaaagtggcagactaaagtgagcaga 101  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||| | ||    
T  43733969 catcataccactaaaccaaaaacctttgaatgacgtccaaagacaaatctgcagcaaccaaaatgaatcacaacaaacgtggcagactaaagtgacctga 43733870  T
Q  102 gaattacccacgaagcct 119  Q
    |||| |||||||||||||    
T  43733869 gaatgacccacgaagcct 43733852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 43733854 - 43733816
Alignment:
Q  178 cctctaaaaagtgggacccaagtgtttttgatggtccca 216  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  43733854 cctctaaaaagtgggacccaagtgttgttgatggtccca 43733816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 143 - 265
Target Start/End: Complemental strand, 28031644 - 28031522
Alignment:
Q  143 aaaaatcaatcaacttcaaataaatctccaaacgacctctaaaaagtgggacccaagtgtttttgatggtcccagacaacacagaacagcaaggtgagtc 242  Q
    ||||| |||||||||| ||| |||||||| | | |||||| |||||||||||||| |   | |||||| ||||| || ||||| ||||||||||||||||    
T  28031644 aaaaaccaatcaactttaaagaaatctcctagcaacctctcaaaagtgggacccacgcactgttgatgttcccaaacgacacaaaacagcaaggtgagtc 28031545  T
Q  243 agatgatgacagtggcgattgaa 265  Q
    | |||||  ||||||| ||||||    
T  28031544 aaatgattgcagtggcaattgaa 28031522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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