View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0745_high_11 (Length: 316)
Name: NF0745_high_11
Description: NF0745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0745_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 32183043 - 32182719
Alignment:
| Q |
1 |
ttgaaaactaatgttaaatcataaacaacagattaccacatgtggagtcggcagcaattcatgtaaagctttgaggttatcagcgatacgttgcctgcgt |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32183043 |
ttgaaaactaatcttaaatcataaacaacagattaccacatgtggagtcggcagcaattcatgtaaagctttgaggttatcagcaatacgttgcctgcgt |
32182944 |
T |
|
| Q |
101 |
tgctatattcaaagagtacagggtaagaaagaaacaaaattgtgttgatgaattggaataagattattaactagttgacaagagc-----atagttttga |
195 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||| |
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| T |
32182943 |
tgctatattcaaagagtacacggtaagaaagaaacaaaattgtgttgatgaattggaataagattgttaactagttgacaagagcatagcatagtattga |
32182844 |
T |
|
| Q |
196 |
atttaatg--------------atatatctgcattttgaatgtggccgttatgattttatcagagatggaaaacgttttacttacacggtcactgtaacg |
281 |
Q |
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| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
32182843 |
acttaatgatatcatatgtggtatatatctgcattttgaatgtggccgttatgattttatcagagatagaaaaccttttacttacacggtcactgtaacg |
32182744 |
T |
|
| Q |
282 |
tgttttctcacttttctgttctgtg |
306 |
Q |
| |
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|||||||||||||||||||| |||| |
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| T |
32182743 |
tgttttctcacttttctgttttgtg |
32182719 |
T |
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