View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0745_high_14 (Length: 306)
Name: NF0745_high_14
Description: NF0745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0745_high_14 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 51808652 - 51808358
Alignment:
| Q |
1 |
ctaacagtcacgtcatggggttttgttaaaaagcactcgccgaatgatctcttgcatcaacaactttatcaacaatatgttgacagcaaagtttgcatct |
100 |
Q |
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|||||||||| | ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
51808652 |
ctaacagtcatggcatggggttttgttaaagagcacgcgccgaatgatctcttgcatcaataactttatcaacaatatgttgacagcaaaatttgcatct |
51808553 |
T |
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| Q |
101 |
gatacgatatgaatgaaccgtgtgcatctattttcaacggtcaatctcaggtcaa-taacaactgtaatttcgttgcatgttgtatgttatatcttaaat |
199 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51808552 |
gatacgatatgaatgaaccatgtgcatctattttcaacggtcaatctcaggtcaaataacaactgtaatttcgttgcatgttgtatgttatatcttaaat |
51808453 |
T |
|
| Q |
200 |
tctttgttattatgcactaatagtggacttgttatattcatctactcttgattgagaaattgcctgctcgagatatttgaaagttttctgatatt |
294 |
Q |
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| T |
51808452 |
tctttgttattatgcactaatagtggacttgttatattcatctactcttgattgagaaattgcctgctcgagatatttgaaagttttctgatatt |
51808358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 186 - 294
Target Start/End: Complemental strand, 51804516 - 51804409
Alignment:
| Q |
186 |
gttatatcttaaattctttgttattatgcactaatagtggacttgttatattcatctactcttgattgagaaattgcctgctcgagatatttgaaagttt |
285 |
Q |
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||||||||||||||||||| | |||||| |||| |||||||||||| |||||||||| | || |||||||||||||||||||| |||||||||||||| |
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| T |
51804516 |
gttatatcttaaattctttatg-ttatgctctaagagtggacttgttctattcatctaagcatgcttgagaaattgcctgctcgatatatttgaaagttt |
51804418 |
T |
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| Q |
286 |
tctgatatt |
294 |
Q |
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| T |
51804417 |
tctgatatt |
51804409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 51804713 - 51804639
Alignment:
| Q |
25 |
gttaaaaagcactcgccgaatgatctcttgcatcaacaactttatcaacaatatgttgacagcaaagtttgcatc |
99 |
Q |
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|||| ||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||| |
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| T |
51804713 |
gttacaaagcacatgccaaatgatctcttgcattaacaactttatcaacaatatgttgacagccaagtttacatc |
51804639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 294
Target Start/End: Complemental strand, 51780679 - 51780640
Alignment:
| Q |
255 |
gaaattgcctgctcgagatatttgaaagttttctgatatt |
294 |
Q |
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| T |
51780679 |
gaaattgcctgctcgagatatttgaaagttttctgatatt |
51780640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 51790411 - 51790337
Alignment:
| Q |
43 |
aatgatctcttgcatcaacaactttatcaacaatatgttgacagcaaagtttgcatctgatacgatatgaatgaa |
117 |
Q |
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|||||| ||||||||| || ||||||||||||||||||||| ||| | || |||||| | ||||||||||||| |
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| T |
51790411 |
aatgatttcttgcatctactactttatcaacaatatgttgaaagccatgtctgcatccgtgccgatatgaatgaa |
51790337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 51773195 - 51773139
Alignment:
| Q |
30 |
aaagcactcgccgaatgatctcttgcatcaacaactttatcaacaatatgttgacag |
86 |
Q |
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||||||| || | ||||||||| | ||| ||||||||||||||||||||||||||| |
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| T |
51773195 |
aaagcacgcgtcaaatgatctcgtttatccacaactttatcaacaatatgttgacag |
51773139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 51780811 - 51780779
Alignment:
| Q |
55 |
catcaacaactttatcaacaatatgttgacagc |
87 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
51780811 |
catccacaactttatcaacaatatgttgacagc |
51780779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 243 - 294
Target Start/End: Complemental strand, 7335 - 7284
Alignment:
| Q |
243 |
actcttgattgagaaattgcctgctcgagatatttgaaagttttctgatatt |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7335 |
actcttgattgagaaattgcctgctcgagatatttgaaagttttctgatatt |
7284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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