View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0745_high_23 (Length: 232)

Name: NF0745_high_23
Description: NF0745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0745_high_23
NF0745_high_23
[»] chr2 (3 HSPs)
chr2 (16-120)||(7702743-7702847)
chr2 (19-91)||(27150935-27151007)
chr2 (72-120)||(31481092-31481140)
[»] chr1 (4 HSPs)
chr1 (16-120)||(39367825-39367929)
chr1 (16-120)||(18308460-18308564)
chr1 (74-119)||(17113238-17113283)
chr1 (28-120)||(47694563-47694654)
[»] chr4 (1 HSPs)
chr4 (20-120)||(37750679-37750779)
[»] chr5 (3 HSPs)
chr5 (46-120)||(38449696-38449770)
chr5 (16-102)||(31571345-31571427)
chr5 (28-118)||(10869967-10870060)
[»] chr7 (3 HSPs)
chr7 (25-115)||(26608255-26608348)
chr7 (25-96)||(26618797-26618871)
chr7 (25-61)||(26620787-26620823)
[»] chr8 (1 HSPs)
chr8 (16-82)||(14997964-14998030)
[»] chr6 (1 HSPs)
chr6 (20-120)||(30129378-30129481)
[»] chr3 (1 HSPs)
chr3 (20-119)||(35083276-35083378)


Alignment Details
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 7702847 - 7702743
Alignment:
Q  16 atcaaaatatagtattttgatttgcttggatcatgtaaaaacacttatgcaatctctagattcaatgtgatggattgagtacaaaaactcctattgataa 115  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  7702847 atcaaaatgtagtattttgatttgcttggatcatgtaaaaacacttatgcaatctctagattcaatgtggtagattgagtacaaaaactcctattgataa 7702748  T
Q  116 tccac 120  Q
    |||||    
T  7702747 tccac 7702743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 27150935 - 27151007
Alignment:
Q  19 aaaatatagtattttgatttgcttggatcatgtaaaaacacttatgcaatctctagattcaatgtgatggatt 91  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||    
T  27150935 aaaatgtagtattttgatttgcttggatcatgtaaaaacaattatgtaatctctagattcaatgtggtggatt 27151007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 31481140 - 31481092
Alignment:
Q  72 tagattcaatgtgatggattgagtacaaaaactcctattgataatccac 120  Q
    ||||||||||||| |||||||| |||||||| ||||||  |||||||||    
T  31481140 tagattcaatgtggtggattgactacaaaaaatcctataaataatccac 31481092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 39367825 - 39367929
Alignment:
Q  16 atcaaaatatagtattttgatttgcttggatcatgtaaaaacacttatgcaatctctagattcaatgtgatggattgagtacaaaaactcctattgataa 115  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| |||||    
T  39367825 atcaaaatgtagtattttgatttgcttggatcatgtaaaaacacttatgtaatctctagattcaatgtggtggattgagtaaaaaaactcctatagataa 39367924  T
Q  116 tccac 120  Q
    |||||    
T  39367925 tccac 39367929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 18308564 - 18308460
Alignment:
Q  16 atcaaaatatagtattttgatttgcttggatcatgtaaaaacacttatgcaatctctagattcaatgtgatggattgagtacaaaaactcctattgataa 115  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| | ||||||| |||||    
T  18308564 atcaaaatgtagtattttgatttgtttggatcatgtaaaaacacttatgtaatttctagattcaatgtggtggattgagtacaacagctcctatagataa 18308465  T
Q  116 tccac 120  Q
    |||||    
T  18308464 tccac 18308460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 17113283 - 17113238
Alignment:
Q  74 gattcaatgtgatggattgagtacaaaaactcctattgataatcca 119  Q
    ||||||||||| | ||||||| |||||||||||||| |||||||||    
T  17113283 gattcaatgtggtagattgagcacaaaaactcctatagataatcca 17113238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 47694563 - 47694654
Alignment:
Q  28 tattttgatttgcttggatcatgtaaaaacacttatgcaatctctagattcaatgtgatggattgagtacaaaaactcctattgataatccac 120  Q
    |||| ||||||||||||||  |||||||  |||||||  || |||| |||||||||| ||||| ||  ||||||| |||||| ||||||||||    
T  47694563 tattgtgatttgcttggattgtgtaaaattacttatgtgatttctatattcaatgtg-tggatagacaacaaaaaatcctatagataatccac 47694654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 37750679 - 37750779
Alignment:
Q  20 aaatatagtattttgatttgcttggatcatgtaaaaacacttatgcaatctctagattcaatgtgatggattgagtacaaaaactcctattgataatcca 119  Q
    |||| ||||||||||| ||| |||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||| |||||||||    
T  37750679 aaatgtagtattttgaattgtttggatcatgtaaaaacacttatgtaatctttagattcaatgtggtggattgagtacaaaaactcctatagataatcca 37750778  T
Q  120 c 120  Q
    |    
T  37750779 c 37750779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 38449696 - 38449770
Alignment:
Q  46 tcatgtaaaaacacttatgcaatctctagattcaatgtgatggattgagtacaaaaactcctattgataatccac 120  Q
    ||||||||||||||||||| ||| ||||||||||||||| | |||||||||||||||||||||| ||||||||||    
T  38449696 tcatgtaaaaacacttatgtaatatctagattcaatgtggtagattgagtacaaaaactcctatagataatccac 38449770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 31571427 - 31571345
Alignment:
Q  16 atcaaaatatagtattttgatttgcttggatcatgtaaaaacacttatgcaatctctagattcaatgtgatggattgagtacaaaaa 102  Q
    |||||||  |||||||||| |||||||||||||||||    |||||||| ||| ||||||||||||||| |||||||||||||||||    
T  31571427 atcaaaaagtagtattttgctttgcttggatcatgta----cacttatgtaatttctagattcaatgtggtggattgagtacaaaaa 31571345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 118
Target Start/End: Complemental strand, 10870060 - 10869967
Alignment:
Q  28 tattttgatttgcttggatcatgtaaaaacactt---atgcaatctctagattcaatgtgatggattgagtacaaaaactcctattgataatcc 118  Q
    |||| ||||||||||||||  |||||||| ||||   |||  || ||||||||||||||| ||||| || ||||||||||||||| ||||||||    
T  10870060 tattgtgatttgcttggattgtgtaaaaatacttgttatgtgatttctagattcaatgtggtggatagactacaaaaactcctatagataatcc 10869967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 26608255 - 26608348
Alignment:
Q  25 tagtattttgatttgcttggatcatgtaaaaacac---ttatgcaatctctagattcaatgtgatggattgagtacaaaaactcctattgataa 115  Q
    ||||||||||||||||||||||||||||||| |||   ||||| ||| | ||||||||||||| ||||||||||| ||||||| |||| |||||    
T  26608255 tagtattttgatttgcttggatcatgtaaaatcacttgttatgtaatttttagattcaatgtggtggattgagtaaaaaaactgctatagataa 26608348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 26618797 - 26618871
Alignment:
Q  25 tagtattttgatttgcttggatcatgtaaaaacac---ttatgcaatctctagattcaatgtgatggattgagta 96  Q
    |||||||||||||||||||||| ||| ||||||||   ||||| ||| ||||||||||||||| ||||| |||||    
T  26618797 tagtattttgatttgcttggataatgaaaaaacacttgttatgtaatttctagattcaatgtggtggatagagta 26618871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 26620787 - 26620823
Alignment:
Q  25 tagtattttgatttgcttggatcatgtaaaaacactt 61  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  26620787 tagtattttggtttccttggatcatgtaaaaacactt 26620823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 14998030 - 14997964
Alignment:
Q  16 atcaaaatatagtattttgatttgcttggatcatgtaaaaacacttatgcaatctctagattcaatg 82  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||| | ||| |||||||||||||    
T  14998030 atcaaaatgtagtattttaatttgcttggatcatgtaaaaacacttacgtaatttctagattcaatg 14997964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 30129378 - 30129481
Alignment:
Q  20 aaatatagtattttgatttgcttggatcatgtaaaaacactt---atgcaatctctagattcaatgtgatggattgagtacaaaaactcctattgataat 116  Q
    ||||||| | || ||||||||||||||  |||||||| ||||   |||  || |||||||||||||||||||||||| ||||||||| | ||| ||||||    
T  30129378 aaatataatgttgtgatttgcttggattttgtaaaaatacttgtgatgtgatttctagattcaatgtgatggattgactacaaaaacacttatagataat 30129477  T
Q  117 ccac 120  Q
    ||||    
T  30129478 ccac 30129481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 35083378 - 35083276
Alignment:
Q  20 aaatatagtattttgatttgcttggatcatgtaaaaacact---tatgcaatctctagattcaatgtgatggattgagtacaaaaactcctattgataat 116  Q
    |||| ||||||| |||||| |||| || |||||||| ||||   ||||  || ||||||||||||||| |||||||||||||||||||| |||  |||||    
T  35083378 aaatttagtattgtgatttacttgaattatgtaaaagcactcgttatgtgatttctagattcaatgtggtggattgagtacaaaaactcttatacataat 35083279  T
Q  117 cca 119  Q
    |||    
T  35083278 cca 35083276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3678 times since January 2019
Visitors: 4818