View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0745_high_5 (Length: 434)
Name: NF0745_high_5
Description: NF0745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0745_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 13 - 405
Target Start/End: Original strand, 32083536 - 32083928
Alignment:
| Q |
13 |
aaaatcaccataattatactcaaaactttgagccaaacgactcctttcaccattcaaagctttcaacttgacaaataaaggatcctcttcactttcaaat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32083536 |
aaaatcaccataattatactcaaaactttgagccaaacgactcctttcaccattcaaagctttcaacttgacaaataaaggatcctcttcactttcaaat |
32083635 |
T |
|
| Q |
113 |
cttctatcaaacataatcctatacataatattatacatcatcaactgcaacctcttccttataacaatcccaccaatactcgcttcggcgttgttcttaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32083636 |
cttctatcaaacataatcctatacataatattatacatcatcaactgcaacctcttccttataacaatcccaccaatacttgcttcggcgttgttcttaa |
32083735 |
T |
|
| Q |
213 |
catcgttaacaacactctcagcttcagactcccacccgtaacgatactgttgaacaaccttgtttgtaaaaaacggaactgtcatgattctgcgcatttt |
312 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32083736 |
catcgttaacaacactctcagcttcagactcccacccgtaacgatactgttgaacaaccttgtttgtaaaaaacggaactgtcatgattctgcgcatttt |
32083835 |
T |
|
| Q |
313 |
acgccaatgttcgccgtagactgtgaacaccatgtcttgtcctttacctgtgaagatatcgaaaactacgttacgtgtacgtgatccgaattc |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32083836 |
acgccaatgttcgccgtagactgtgaacaccatgtcttgtcctttaccagtgaagatatcgaaaactacgttacgtgtacgtgatccgaattc |
32083928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 262 - 387
Target Start/End: Complemental strand, 50240541 - 50240416
Alignment:
| Q |
262 |
ttgaacaaccttgtttgtaaaaaacggaactgtcatgattctgcgcattttacgccaatgttcgccgtagactgtgaacaccatgtcttgtcctttacct |
361 |
Q |
| |
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||||||||| ||||| || ||||| || | |||||||||||| |||||||| |||||||| || || ||||| ||||| |||||||||||||| ||||| |
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| T |
50240541 |
ttgaacaactttgttagtgaaaaatggcaatgtcatgattcttcgcattttgcgccaatgatcaccatagacagtgaaaaccatgtcttgtccattacca |
50240442 |
T |
|
| Q |
362 |
gtgaagatatcgaaaactacgttacg |
387 |
Q |
| |
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|||||||| || || || |||||||| |
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| T |
50240441 |
gtgaagatgtcaaagacaacgttacg |
50240416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 50240685 - 50240644
Alignment:
| Q |
118 |
atcaaacataatcctatacataatattatacatcatcaactg |
159 |
Q |
| |
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||||||||| ||||||||||| |||||||||| ||||||||| |
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| T |
50240685 |
atcaaacatcatcctatacatgatattatacagcatcaactg |
50240644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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