View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0745_low_18 (Length: 326)
Name: NF0745_low_18
Description: NF0745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0745_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 11 - 300
Target Start/End: Original strand, 51808691 - 51808977
Alignment:
| Q |
11 |
cagagaggtctattttgaggtcaatgaagggagattatttttatggtagaaaagaagatggaaagcaatgtaaatagaaagatagaaaaaactattagaa |
110 |
Q |
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| T |
51808691 |
cagagaggtctattttgaggtgaatgaagggagattattgttatggtagaaaagaagatggaaagcaatgtaaatagaaagatagaaaaaactatt---a |
51808787 |
T |
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| Q |
111 |
gaagtttaagtttcaggctgttacttgcggcttattatgtgcatgctttcaagaactttgaaatggtattaaaaccgttcaannnnnnnnnataaaattt |
210 |
Q |
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| T |
51808788 |
gaagttttagtttcaggctgttacttgcggcttattatgtgcatgctttcaagaactttgaaatggtattaaaaccgttcaatttttttttataaaattt |
51808887 |
T |
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| Q |
211 |
gtcaatataggataggatagtcatggtgcaagaggaaaaagatacaatttttccatttatcactctccagagaccatatataatatgtga |
300 |
Q |
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| T |
51808888 |
gtctatataggataggatagtcatggtgcaagaggaaaaagatacaatttttccatttatcactctccagagaccatatataatatgtga |
51808977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 51804794 - 51804852
Alignment:
| Q |
33 |
aatgaagggagattatttttatggtagaaaagaagatggaaagcaatgtaaatagaaaga |
92 |
Q |
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| T |
51804794 |
aatgaagggagattattgttatggttgaaaa-aggatggaaagaaaagtaaatagaaaga |
51804852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 51773201 - 51773259
Alignment:
| Q |
34 |
atgaagggagattatttttatggtagaaaagaagatggaaagcaatgtaaatagaaaga |
92 |
Q |
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| T |
51773201 |
atgaaaggaggttatttttatggtagaaaacaagatggaaggagaagtaaatagaaaga |
51773259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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