View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0745_low_2 (Length: 477)
Name: NF0745_low_2
Description: NF0745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0745_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 84 - 380
Target Start/End: Complemental strand, 34861582 - 34861286
Alignment:
| Q |
84 |
cacagatcacagctagccaaaacatggttctataaaaatctgtccatctacaataaaaaacaaataatctgattgataaatgaagtatcattcattatgt |
183 |
Q |
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| T |
34861582 |
cacagatcacagctagccaaaacatggttctataaaaatctgtccatctacaataaaaaacaaataatctgattgataaatgaagtatcattcattatgt |
34861483 |
T |
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| Q |
184 |
aaacaaaaggtgttcattttcataattggtgttcattgtcatatcaaaaggaaagacctaatttcacaaacaaaattataatgcattgacacatgtataa |
283 |
Q |
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| T |
34861482 |
aaacaaaaggtgttcattttcataattggtgttcattgtcatatcaaaaggaaagacctaatttcacaaacaaaattataatgcattgacacatgtataa |
34861383 |
T |
|
| Q |
284 |
cttacccactggaatgctgtgaatccaaaatatattcagcttccggttttatatttgtgctctgcaaaggtatgagttgtttattaaggacattaat |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34861382 |
cttacccactggaatgctgtgaatccaaaatatattcagcttccggcttcatatttgtgctctgcaaaggtatgagttgtttattaaggacattaat |
34861286 |
T |
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