View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0745_low_25 (Length: 310)
Name: NF0745_low_25
Description: NF0745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0745_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 70 - 222
Target Start/End: Complemental strand, 27442440 - 27442288
Alignment:
| Q |
70 |
gatgaactaatatagcaagcaacattttttgttggctattggcagaaatgttctaatggttgaacaagacaaaaaacacttttatcaactactcaatgta |
169 |
Q |
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| T |
27442440 |
gatgaactaatatagcaagcaacattttttgttggctattggcagaaatgttctaatggttgaacaagacaaaaaaaacttttatcaactactcaatgta |
27442341 |
T |
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| Q |
170 |
taagactaatttattcttataaccaattagactgaaaagttgtcccttgacat |
222 |
Q |
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| T |
27442340 |
taagactaatttattcttataaccaattagactgaaaagttgtcccttgacat |
27442288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 71 - 222
Target Start/End: Complemental strand, 27439663 - 27439512
Alignment:
| Q |
71 |
atgaactaatatagcaagcaacattttttgttggctattggcagaaatgttctaatggttgaacaagacaaaaaa-cacttttatcaactactcaatgta |
169 |
Q |
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| T |
27439663 |
atgaattaatatagcaagcaacattgtttgttgt-tattggcagaaatattctaatggatgaacaagacaaaaaaacatttttatcaactactcaatgta |
27439565 |
T |
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| Q |
170 |
taagactaatttattcttataaccaattagactgaaaagttgtcccttgacat |
222 |
Q |
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| T |
27439564 |
taagagtaatttattcttataatcaactagactgaagagttgtcccttgacat |
27439512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 71 - 171
Target Start/End: Complemental strand, 27946676 - 27946577
Alignment:
| Q |
71 |
atgaactaatatagcaagcaacattttttgttggctattggcagaaatgttctaatggttgaacaagacaaaaaacacttttatcaactactcaatgtat |
170 |
Q |
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| T |
27946676 |
atgaattaatatacaaagcaacattgtttattggttattagcagaaatgttctaatcgatgaacaagacaaaaaacac-tttatcaactactcaatgtat |
27946578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 170
Target Start/End: Complemental strand, 27585429 - 27585346
Alignment:
| Q |
87 |
agcaacattttttgttggctattggcagaaatgttctaatggttgaacaagacaaaaaacacttttatcaactactcaatgtat |
170 |
Q |
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||||||||| ||||||||||||||||||| ||||| ||| |||||||| || || ||||||| ||| ||||||||||||| |
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| T |
27585429 |
agcaacattgtttgttggctattggcagatatgttataagctatgaacaaggcatgaaccacttttctcagctactcaatgtat |
27585346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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