View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0745_low_30 (Length: 272)
Name: NF0745_low_30
Description: NF0745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0745_low_30 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 272
Target Start/End: Original strand, 28289263 - 28289521
Alignment:
| Q |
14 |
atataagtacaggtaaggctagcaaagagtcggatgtgtacagttttggggttgttaccttggagatcacaaccggaaggaaagccgttgaagttatgag |
113 |
Q |
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| T |
28289263 |
atataagtacaggtaaggctagcaaagagtcagatgtgtatagttttggggttgttgccttggagatcacaactggacggaaagctgttgaagttatgag |
28289362 |
T |
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| Q |
114 |
ggataaagatggagataagggattgattgagtgggtttgggatcattatggaagaggagagttacttgtggcaatggatgagaacttgaaaaaggatttt |
213 |
Q |
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| T |
28289363 |
ggataaagatggagataagggattgattgagtgggtttgggatcatcatggaagaggagagctacttgtgaccatggatgagaatttgcgaaaggatttc |
28289462 |
T |
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| Q |
214 |
gttgagaaacaagttgagtgtttgatgattgttggattgtggtgtgctcatcctgatgt |
272 |
Q |
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| T |
28289463 |
gatgagaaacaagtagagtgtttgttgattgttggattatggtgtgctcatcctgatgt |
28289521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 14 - 272
Target Start/End: Original strand, 28279398 - 28279656
Alignment:
| Q |
14 |
atataagtacaggtaaggctagcaaagagtcggatgtgtacagttttggggttgttaccttggagatcacaaccggaaggaaagccgttgaagttatgag |
113 |
Q |
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| T |
28279398 |
atataagtacaggtaaggctagcaaagaatctgatgtctatagctttggggttgtcgtcttggagatcacaactggaaggaaagccgttgaagttatgga |
28279497 |
T |
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| Q |
114 |
ggataaagatggagataagggattgattgagtgggtttgggatcattatggaagaggagagttacttgtggcaatggatgagaacttgaaaaaggatttt |
213 |
Q |
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| T |
28279498 |
ggacaaagatggagataagggattgattgagtgggtttgggatcattatggaagagaagaaatactcgtgaccatggatgagaatttgcgaaaggatttc |
28279597 |
T |
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| Q |
214 |
gttgagaaacaagttgagtgtttgatgattgttggattgtggtgtgctcatcctgatgt |
272 |
Q |
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| T |
28279598 |
gatgagaaacaagtagagtgtttgttgattgttggattatggtgtgttcatcctgatgt |
28279656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 14 - 272
Target Start/End: Complemental strand, 28264473 - 28264215
Alignment:
| Q |
14 |
atataagtacaggtaaggctagcaaagagtcggatgtgtacagttttggggttgttaccttggagatcacaaccggaaggaaagccgttgaagttatgag |
113 |
Q |
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| T |
28264473 |
atataagtacaggtaagactagcaaagagtcagatgtgtatagttttggggttgttgccttggaaatcgcaactggaaagaaagctgttcaagttatgaa |
28264374 |
T |
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| Q |
114 |
ggataaagatggagataagggattgattgagtgggtttgggatcattatggaagaggagagttacttgtggcaatggatgagaacttgaaaaaggatttt |
213 |
Q |
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||| ||| || |||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| | ||||||||||| ||| ||||||||||| |
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| T |
28264373 |
ggaacaaggtgaagataagggattaattgactgggtttgggatcattatggaagaggagaactacttgtgactatggatgagaatttgcaaaaggatttt |
28264274 |
T |
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| Q |
214 |
gttgagaaacaagttgagtgtttgatgattgttggattgtggtgtgctcatcctgatgt |
272 |
Q |
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| T |
28264273 |
gatgagaaacaagtagagtttttgttgattgttggattatggtgtgctcatccggatgt |
28264215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 28304485 - 28304232
Alignment:
| Q |
19 |
agtacaggtaaggctagcaaagagtcggatgtgtacagttttggggttgttaccttggagatcacaaccggaaggaaagccgttgaagttatgagggata |
118 |
Q |
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|||||||| | ||| || |||||||| ||||| || ||||||||| | ||| ||| ||||| || |||||| ||||| ||||||||||| ||| | |
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| T |
28304485 |
agtacaggaagggcgagtaaagagtcagatgtttatagttttgggatagttgtcttagagataacctccggaaaaaaagctactgaagttatgaaggaga |
28304386 |
T |
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| Q |
119 |
aagatggagataagggattgattgagtgggtttgggatcattatggaagaggagagttacttgtggcaatggatgagaacttgaaaaaggattttgttga |
218 |
Q |
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|||||| ||| |||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||| || ||||||| ||| |
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| T |
28304385 |
aagatgaagagaagggaatgattgagtgggtttgggatcattatggaaaaggagagctacttgtggcaatggatgagaatttgaggaaagattttgatga |
28304286 |
T |
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| Q |
219 |
gaaacaagttgagtgtttgatgattgttggattgtggtgtgctcatcctgatgt |
272 |
Q |
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| T |
28304285 |
gaaacaagtagagtgcttgatgattgttggattatggtgtgctcatcctgatgt |
28304232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 22 - 272
Target Start/End: Complemental strand, 28294280 - 28294030
Alignment:
| Q |
22 |
acaggtaaggctagcaaagagtcggatgtgtacagttttggggttgttaccttggagatcacaaccggaaggaaagccgttgaagttatgagggataaag |
121 |
Q |
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||||||| ||| || |||||||| |||||||| ||||||||| | ||| | |||||||| || || || | |||||| | |||| |||| | | ||| |
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| T |
28294280 |
acaggtagggcaagtaaagagtcagatgtgtatagttttgggatagttgctttggagataactactggtaagaaagctactaaagtgatgaagcaaaaaa |
28294181 |
T |
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| Q |
122 |
atggagataagggattgattgagtgggtttgggatcattatggaagaggagagttacttgtggcaatggatgagaacttgaaaaaggattttgttgagaa |
221 |
Q |
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||| ||| ||||| ||||||| ||| ||||||||||||||||||| |||||| ||||||| || |||||||| || ||| |||| ||||||| |||||| |
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| T |
28294180 |
atgaagagcagggaatgattgaatggatttgggatcattatggaagtggagagctacttgtcgccatggatgaaaatttgcaaaatgattttgatgagaa |
28294081 |
T |
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| Q |
222 |
acaagttgagtgtttgatgattgttggattgtggtgtgctcatcctgatgt |
272 |
Q |
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| T |
28294080 |
agaagtagagtgcttgatgattgttggattgtggtgtgctcatcctgatgt |
28294030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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