View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0745_low_32 (Length: 251)
Name: NF0745_low_32
Description: NF0745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0745_low_32 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 36002204 - 36001961
Alignment:
| Q |
8 |
gagcagagacccatgcattattatgattgaatttagtgctttctgaacactgtgatgtttcttttatgctacagaaactagacaatttaatgaaaattgc |
107 |
Q |
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| T |
36002204 |
gagcaaagacccatgcattattatgattgaatttagtgctttctgaacactgtgatgtttcttttatgctacagaaactagacaatttgatgaaaattga |
36002105 |
T |
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| Q |
108 |
gcttgattattccaaagacctggttgagatcccagacttatctagggcgccaaatcttgaactagtatctctttcctattgtgagaatctctgtaaactc |
207 |
Q |
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| T |
36002104 |
gcttgattattccaaagacctggttgagataccagacttatctagggcgccaaatcttgaactagtatctctttcctattgtgagaatctctgtaaactc |
36002005 |
T |
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| Q |
208 |
catgaatccattttgactgcccccaagcttagttatctacgttt |
251 |
Q |
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| T |
36002004 |
catgaatccattttgactgcccccaagcttagttatctacgttt |
36001961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 168
Target Start/End: Complemental strand, 23351570 - 23351520
Alignment:
| Q |
118 |
tccaaagacctggttgagatcccagacttatctagggcgccaaatcttgaa |
168 |
Q |
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| T |
23351570 |
tccaaagatctgattgagatcccagacttatctagggctacaaatcttgaa |
23351520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 23404279 - 23404231
Alignment:
| Q |
118 |
tccaaagacctggttgagatcccagacttatctagggcgccaaatcttg |
166 |
Q |
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| T |
23404279 |
tccaaagatctgattgagatcccagacttatctagggctacaaatcttg |
23404231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 23462898 - 23462850
Alignment:
| Q |
118 |
tccaaagacctggttgagatcccagacttatctagggcgccaaatcttg |
166 |
Q |
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| T |
23462898 |
tccaaagatctgattgagatcccagacttatctagggctacaaatcttg |
23462850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 23472013 - 23471958
Alignment:
| Q |
113 |
attattccaaagacctggttgagatcccagacttatctagggcgccaaatcttgaa |
168 |
Q |
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| T |
23472013 |
attactccaaagatctgattgagatcccaaacttatctagggctacaaatcttgaa |
23471958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 23385908 - 23385871
Alignment:
| Q |
118 |
tccaaagacctggttgagatcccagacttatctagggc |
155 |
Q |
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| T |
23385908 |
tccaaagatctgattgagatcccagacttatctagggc |
23385871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 23439477 - 23439424
Alignment:
| Q |
113 |
attattccaaagacctggttgagatcccagacttatctagggcgccaaatcttg |
166 |
Q |
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| T |
23439477 |
attactccaaagatctgattgagatccccgacttatctagggctacaaatcttg |
23439424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 51 - 239
Target Start/End: Original strand, 12897349 - 12897537
Alignment:
| Q |
51 |
tgaacactgtgatgtttcttttatgctacagaaactagacaatttaatgaaaattgcgcttgattattccaaagacctggttgagatcccagacttatct |
150 |
Q |
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| T |
12897349 |
tgaacaatgtgatgtttcttttttcctacagaagcttgacaatttgatgattattatgcttgattactccaaagacttgattgagatcccagacttatct |
12897448 |
T |
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| Q |
151 |
agggcgccaaatcttgaactagtatctctttcctattgtgagaatctctgtaaactccatgaatccattttgactgcccccaagcttag |
239 |
Q |
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| T |
12897449 |
aaggcgccaaaacttgaactagtatctctttcttattgcgagagtctctgccaactccatccatccattttcactgccccgaagcttag |
12897537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 239
Target Start/End: Complemental strand, 16121299 - 16121097
Alignment:
| Q |
37 |
aatttagtgctttctgaacactgtgatgtttcttttatgctacagaaactagacaatttaatgaaaattgcgcttgattattccaaagacctggttgaga |
136 |
Q |
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| T |
16121299 |
aatttaatgatttctgaacaatgtgatgtttctttcttcctacagaagcttgacaatttaacaatcattaaacttgataactctgaagacctgattgaga |
16121200 |
T |
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| Q |
137 |
tcccagacttatctagggcgccaaatcttgaactagtatctctttcctattgtgagaatctctgtaaactccatgaatccattttgactgcccccaagct |
236 |
Q |
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| T |
16121199 |
ttccggacttatcaagagcaccgaatcttaaaatattatctcttgcttattgtgtaagtctccatcaactccatccatccattttcagtgcccccaagct |
16121100 |
T |
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| Q |
237 |
tag |
239 |
Q |
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||| |
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| T |
16121099 |
tag |
16121097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 239
Target Start/End: Original strand, 16337865 - 16338067
Alignment:
| Q |
37 |
aatttagtgctttctgaacactgtgatgtttcttttatgctacagaaactagacaatttaatgaaaattgcgcttgattattccaaagacctggttgaga |
136 |
Q |
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| T |
16337865 |
aatttaatgatttctgaacaatgtgatgtttctttcttcctacagaagcttgacaatttaacaatcattaaacttgataactctgaagacctgattgaga |
16337964 |
T |
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| Q |
137 |
tcccagacttatctagggcgccaaatcttgaactagtatctctttcctattgtgagaatctctgtaaactccatgaatccattttgactgcccccaagct |
236 |
Q |
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| T |
16337965 |
ttccggacttatcaagagcaccgaatcttaaaatattatctcttgcttattgtgtgagtctccatcaactccatccttccattttcagtgcccccaagct |
16338064 |
T |
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| Q |
237 |
tag |
239 |
Q |
| |
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||| |
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| T |
16338065 |
tag |
16338067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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