View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0745_low_33 (Length: 251)

Name: NF0745_low_33
Description: NF0745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0745_low_33
NF0745_low_33
[»] chr8 (3 HSPs)
chr8 (28-251)||(29272538-29272761)
chr8 (89-157)||(35984652-35984720)
chr8 (90-199)||(31906365-31906474)
[»] scaffold0277 (2 HSPs)
scaffold0277 (30-251)||(3414-3635)
scaffold0277 (30-251)||(12377-12598)
[»] scaffold0419 (1 HSPs)
scaffold0419 (69-251)||(8746-8928)
[»] chr6 (52 HSPs)
chr6 (28-248)||(26803708-26803928)
chr6 (28-251)||(26647738-26647961)
chr6 (28-251)||(26753706-26753929)
chr6 (28-251)||(27717199-27717422)
chr6 (28-251)||(28787497-28787720)
chr6 (28-251)||(28793618-28793841)
chr6 (28-247)||(27603404-27603623)
chr6 (28-247)||(31285822-31286041)
chr6 (29-251)||(27697287-27697509)
chr6 (29-251)||(27609821-27610043)
chr6 (28-251)||(26885326-26885549)
chr6 (79-251)||(26862839-26863011)
chr6 (28-251)||(27426312-27426535)
chr6 (69-251)||(26624530-26624712)
chr6 (69-251)||(26730507-26730689)
chr6 (75-247)||(26657225-26657397)
chr6 (75-247)||(26763196-26763368)
chr6 (80-251)||(26825078-26825249)
chr6 (77-247)||(27680213-27680383)
chr6 (79-244)||(27705005-27705170)
chr6 (28-233)||(25492019-25492224)
chr6 (28-239)||(27215723-27215934)
chr6 (28-202)||(27530004-27530178)
chr6 (79-233)||(29827263-29827417)
chr6 (79-233)||(29842743-29842897)
chr6 (28-233)||(25580999-25581204)
chr6 (28-233)||(26144145-26144350)
chr6 (34-247)||(27591727-27591940)
chr6 (28-238)||(25512163-25512373)
chr6 (28-233)||(25484336-25484541)
chr6 (34-247)||(27676326-27676539)
chr6 (34-247)||(28326741-28326954)
chr6 (34-247)||(28504377-28504590)
chr6 (73-157)||(27663959-27664043)
chr6 (71-247)||(28186657-28186833)
chr6 (30-156)||(26057276-26057402)
chr6 (30-156)||(26077246-26077372)
chr6 (34-247)||(28296446-28296659)
chr6 (34-247)||(28515414-28515627)
chr6 (163-251)||(27336930-27337018)
chr6 (163-251)||(27397670-27397758)
chr6 (77-247)||(28244058-28244228)
chr6 (90-157)||(26978733-26978800)
chr6 (85-188)||(28240679-28240778)
chr6 (129-233)||(25539820-25539924)
chr6 (211-247)||(26812791-26812827)
chr6 (208-247)||(26849975-26850014)
chr6 (90-157)||(26960478-26960545)
chr6 (77-180)||(28182439-28182542)
chr6 (89-155)||(25075222-25075288)
chr6 (79-143)||(28097194-28097258)
chr6 (77-157)||(28140888-28140968)
[»] chr1 (5 HSPs)
chr1 (31-251)||(267043-267263)
chr1 (82-251)||(28132255-28132424)
chr1 (79-251)||(28126426-28126598)
chr1 (79-155)||(26137243-26137319)
chr1 (77-138)||(5922218-5922279)
[»] scaffold1870 (1 HSPs)
scaffold1870 (69-251)||(28-210)
[»] scaffold0349 (1 HSPs)
scaffold0349 (28-251)||(2239-2462)
[»] scaffold0003 (1 HSPs)
scaffold0003 (28-251)||(60828-61051)
[»] chr4 (7 HSPs)
chr4 (28-251)||(18075020-18075243)
chr4 (75-247)||(18722828-18723000)
chr4 (75-245)||(18654220-18654390)
chr4 (75-247)||(18688369-18688541)
chr4 (75-247)||(18698143-18698315)
chr4 (75-247)||(18730247-18730419)
chr4 (75-247)||(18678303-18678475)
[»] chr2 (1 HSPs)
chr2 (79-190)||(3280979-3281090)
[»] scaffold0019 (1 HSPs)
scaffold0019 (73-247)||(57039-57213)
[»] scaffold0038 (2 HSPs)
scaffold0038 (77-247)||(44220-44390)
scaffold0038 (85-188)||(40841-40940)
[»] chr5 (1 HSPs)
chr5 (77-236)||(16692141-16692300)


Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 28 - 251
Target Start/End: Original strand, 29272538 - 29272761
Alignment:
Q  28 caatggccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttctt 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  29272538 caatggccataatgagaatgaagtatatatttggcatcttcccattcacaacctttgaagcaacaagcaatgtccagaaagacactttgttgctcttctt 29272637  T
Q  128 ccaaagcatcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttcc 227  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29272638 ccaaagcatcataacttactttaagtatctggtggatccttttattgggaatcttttcatatccatctaatgtacccttccattcttctatcctctttcc 29272737  T
Q  228 aaacaagttggaacccactatttc 251  Q
    ||||||||||||||||||||||||    
T  29272738 aaacaagttggaacccactatttc 29272761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 35984720 - 35984652
Alignment:
Q  89 aacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatct 157  Q
    ||||||||||||| ||||| ||||||||||  ||||| || ||||||||| ||||||||||||||||||    
T  35984720 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatct 35984652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 199
Target Start/End: Complemental strand, 31906474 - 31906365
Alignment:
Q  90 acaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatctggtagatctttttattgggaatcttttcatat 189  Q
    |||||| ||||| ||||| ||||||| ||  ||||| |||||||||||| |||||||||| ||||| |  | ||||| |||||| |||||  ||||||||    
T  31906474 acaagccatgtcaagaaaaacacttttctcatcttcctccaaagcatcaaaacttactttgagtatattttggatctctttatttggaatgatttcatat 31906375  T
Q  190 ccatctaatg 199  Q
    | || |||||    
T  31906374 cgatgtaatg 31906365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 3414 - 3635
Alignment:
Q  30 atggccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttcc 129  Q
    |||||||||||||| | ||||||||||||     || |||||| ||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||    
T  3414 atggccataatgagcacgaagtatatattcaaactcctcccatccacatcctttgaagcaacaggcaatgtctagaaaaacactttgctgctcttcctcc 3513  T
Q  130 aaagcatcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttccaa 229  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  3514 aaagcatcatagcttactttaagtatctggtggatctttttattgggaatcttttcatatccatctaatgtacccttccattcttctatcgtctttccaa 3613  T
Q  230 acaagttggaacccactatttc 251  Q
    ||||||||||||||||||||||    
T  3614 acaagttggaacccactatttc 3635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 12377 - 12598
Alignment:
Q  30 atggccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttcc 129  Q
    |||||||||||||| | ||||||||||||     || | |||| ||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||    
T  12377 atggccataatgagcacgaagtatatattcaaactccttccatccacatcctttgaagcaacaggcaatgtctagaaaaacactttgctgctcttcctcc 12476  T
Q  130 aaagcatcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttccaa 229  Q
    ||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  12477 aaagcatcatagcttactttaagtatctcgtggatctttttattgggaatcttttcatatccatctaatgtacccttccattcttctatcgtctttccaa 12576  T
Q  230 acaagttggaacccactatttc 251  Q
    ||||||||||||||||||||||    
T  12577 acaagttggaacccactatttc 12598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 69 - 251
Target Start/End: Complemental strand, 8928 - 8746
Alignment:
Q  69 ccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatctggtagatcttt 168  Q
    |||| ||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||    
T  8928 ccatccacatcctttgaagcaacaggcaatgtctagaaaaacactttgctgctcttcctccaaagcatcataacttactttaagtatctcgtggatcttt 8829  T
Q  169 ttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaagttggaacccactatttc 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  8828 ttattgggaatcttttcatatccatctaatgtacccttccattcttctatcgtctttccaaacaagttggaacccactatttc 8746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 52)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 28 - 248
Target Start/End: Complemental strand, 26803928 - 26803708
Alignment:
Q  28 caatggccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttctt 127  Q
    |||||||||||||||  ||||||||||| ||     || |||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |    
T  26803928 caatggccataatgaacatgaagtatatcttcaaactcctcccatccacatcctttgaagcaacaagcaatgtctagaaagacactctgctgctcttcct 26803829  T
Q  128 ccaaagcatcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttcc 227  Q
    ||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||    
T  26803828 ccaaagcatcatagcttactttaagtatctcgtggatctttttattgggaatcttttcatatccatctaatgtacccttccattcttttatgctctttcc 26803729  T
Q  228 aaacaagttggaacccactat 248  Q
    |||||||||||||||||||||    
T  26803728 aaacaagttggaacccactat 26803708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 28 - 251
Target Start/End: Complemental strand, 26647961 - 26647738
Alignment:
Q  28 caatggccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttctt 127  Q
    ||||||||||||||| || ||||||||| ||     || ||||||  ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |    
T  26647961 caatggccataatgataacgaagtatatcttcaaactcctcccatctacatcctttgaagcaacaagcaatgtctagaaagacactctgctgctcttcct 26647862  T
Q  128 ccaaagcatcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttcc 227  Q
    ||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  26647861 ccaaagcatcatagcttactttaagtatctcgtggatctttttattgggaatcttttcatatccatctaatgtacccttccattcttctatgctctttcc 26647762  T
Q  228 aaacaagttggaacccactatttc 251  Q
    | | ||||||||||||||||||||    
T  26647761 atataagttggaacccactatttc 26647738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 28 - 251
Target Start/End: Complemental strand, 26753929 - 26753706
Alignment:
Q  28 caatggccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttctt 127  Q
    ||||||||||||||| || ||||||||| ||     || ||||||  ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |    
T  26753929 caatggccataatgataacgaagtatatcttcaaactcctcccatctacatcctttgaagcaacaagcaatgtctagaaagacactctgctgctcttcct 26753830  T
Q  128 ccaaagcatcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttcc 227  Q
    ||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  26753829 ccaaagcatcatagcttactttaagtatctcgtggatctttttattgggaatcttttcatatccatctaatgtacccttccattcttctatgctctttcc 26753730  T
Q  228 aaacaagttggaacccactatttc 251  Q
    | | ||||||||||||||||||||    
T  26753729 atataagttggaacccactatttc 26753706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 28 - 251
Target Start/End: Original strand, 27717199 - 27717422
Alignment:
Q  28 caatggccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttctt 127  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||| |    
T  27717199 caatggccataatgagaattaagtatatatttggcatcttcccatttacatcttttgaagcaacaagcaatgtctagaaagacactttgctgctcttcct 27717298  T
Q  128 ccaaagcatcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttcc 227  Q
    ||||||||||||||||||||||||||||||  | ||||| ||||||||||||| | ||||| ||||||||||||  ||||||||| || ||  |||||||    
T  27717299 ccaaagcatcataacttactttaagtatcttttggatctctttattgggaatcctgtcatacccatctaatgtattcttccattcctctatgttctttcc 27717398  T
Q  228 aaacaagttggaacccactatttc 251  Q
    | | ||||| ||||||||||||||    
T  27717399 agataagttagaacccactatttc 27717422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 28 - 251
Target Start/End: Complemental strand, 28787720 - 28787497
Alignment:
Q  28 caatggccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttctt 127  Q
    |||||||||||||||| | ||||||||| ||     || ||||| |||||||||||||||||||| |||||||| ||||| |||||||| |||||||| |    
T  28787720 caatggccataatgagcacgaagtatatcttcaaactcctcccactcacatcctttgaagcaacatgcaatgtctagaaaaacactttgttgctcttcct 28787621  T
Q  128 ccaaagcatcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttcc 227  Q
    ||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||    
T  28787620 ccaaagcatcatagcttactttaagtatctcgtggatctttttattgggaatcttttcatatccatctaaagtacccttccattcttctatcgtctttcc 28787521  T
Q  228 aaacaagttggaacccactatttc 251  Q
    ||||||||||||||||||||||||    
T  28787520 aaacaagttggaacccactatttc 28787497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 28 - 251
Target Start/End: Complemental strand, 28793841 - 28793618
Alignment:
Q  28 caatggccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttctt 127  Q
    |||||||||||||||| | ||||||||| ||     || ||||| |||||||||||||||||||| |||||||| ||||| |||||||| |||||||| |    
T  28793841 caatggccataatgagcacgaagtatatcttcaaactcctcccactcacatcctttgaagcaacatgcaatgtctagaaaaacactttgttgctcttcct 28793742  T
Q  128 ccaaagcatcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttcc 227  Q
    ||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||    
T  28793741 ccaaagcatcatagcttactttaagtatctcgtggatctttttattgggaatcttttcatatccatctaaagtacccttccattcttctatcgtctttcc 28793642  T
Q  228 aaacaagttggaacccactatttc 251  Q
    ||||||||||||||||||||||||    
T  28793641 aaacaagttggaacccactatttc 28793618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 28 - 247
Target Start/End: Original strand, 27603404 - 27603623
Alignment:
Q  28 caatggccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttctt 127  Q
    |||||||||||||||| | ||||||||| ||   |  ||||| || |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |    
T  27603404 caatggccataatgagcacgaagtatatcttcaaccacttccaatccacatcctttgaagcaacaagcaatgtctagaaagacactctgctgctcttcct 27603503  T
Q  128 ccaaagcatcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttcc 227  Q
    ||||||||||||| ||||||||||| |||| || ||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||    
T  27603504 ccaaagcatcatagcttactttaagaatctcgtggatctttttattgggaatcttctcatatccttctaacgtacccttccattcttctatcctctttcc 27603603  T
Q  228 aaacaagttggaacccacta 247  Q
    ||||||||||||||||||||    
T  27603604 aaacaagttggaacccacta 27603623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 28 - 247
Target Start/End: Complemental strand, 31286041 - 31285822
Alignment:
Q  28 caatggccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttctt 127  Q
    |||||||||||||||| ||| ||||||| |||| ||||  ||||| | |||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  31286041 caatggccataatgagcatggagtatatctttgacatccgcccatccgcatcctttgaagcaacaagcaatgtccagaaagacactctgctcctcttctt 31285942  T
Q  128 ccaaagcatcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttcc 227  Q
    ||||||||||||| ||||||||||||||||  | ||||| ||||||||||||||| ||||| ||||||||||||| |||||||| ||| || ||||||||    
T  31285941 ccaaagcatcatagcttactttaagtatcttttggatctctttattgggaatcttgtcatacccatctaatgtactcttccatttttctatgctctttcc 31285842  T
Q  228 aaacaagttggaacccacta 247  Q
    ||||||||| ||||||||||    
T  31285841 aaacaagtttgaacccacta 31285822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 29 - 251
Target Start/End: Original strand, 27697287 - 27697509
Alignment:
Q  29 aatggccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttc 128  Q
    ||||||||||||||| |||||| ||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27697287 aatggccataatgagcatgaagcatatatttggcatcttcccatccatgtcctttgaagcaacaagcaatgtccagaaagacactttgctcctcttcttc 27697386  T
Q  129 caaagcatcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttcca 228  Q
    |||||||||||| || ||| |||||||||  | ||||| ||||||||||||| | ||||| ||||||||| ||  |||||||||||| ||  ||||||||    
T  27697387 caaagcatcatagctcactctaagtatcttttggatctctttattgggaatcctgtcatacccatctaatatatacttccattcttctatgttctttcca 27697486  T
Q  229 aacaagttggaacccactatttc 251  Q
    |||||||| ||||||||||||||    
T  27697487 aacaagttagaacccactatttc 27697509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 29 - 251
Target Start/End: Original strand, 27609821 - 27610043
Alignment:
Q  29 aatggccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttc 128  Q
    ||||||||||||||||||||||| |||| || ||||||||||| | | |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27609821 aatggccataatgagaatgaagtgtatactttgcatcttcccaattatatcctttgaagcaacaagcaatgtccagaaagacactttgctcctcttcttc 27609920  T
Q  129 caaagcatcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttcca 228  Q
    ||||| |||||| || |||||||||||||  | ||||| ||||||||||||| | ||||| ||||||||||||  ||||||||| || ||  ||||||||    
T  27609921 caaagaatcatagctcactttaagtatcttttggatctctttattgggaatcctgtcatacccatctaatgtatacttccattcctctatgttctttcca 27610020  T
Q  229 aacaagttggaacccactatttc 251  Q
    |||||||| ||||||||||||||    
T  27610021 aacaagttagaacccactatttc 27610043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 28 - 251
Target Start/End: Complemental strand, 26885549 - 26885326
Alignment:
Q  28 caatggccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttctt 127  Q
    |||||||||||||||| ||||||||||| || | | |||  ||||| ||| ||||||||||||||||| || ||||||||||||||||||| |||||| |    
T  26885549 caatggccataatgagcatgaagtatatcttcgacctctgtccatttacaccctttgaagcaacaagctatatccagaaagacactttgctcctcttcct 26885450  T
Q  128 ccaaagcatcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttcc 227  Q
    | ||||||||||| ||||||||||||||||  | ||||||| |||| |||||||||||||||||||||| ||||| |||||||  ||| || ||||||||    
T  26885449 ctaaagcatcatagcttactttaagtatctcttggatctttgtattaggaatcttttcatatccatctagtgtactcttccatgtttctatgctctttcc 26885350  T
Q  228 aaacaagttggaacccactatttc 251  Q
    ||||||||||||||||||||||||    
T  26885349 aaacaagttggaacccactatttc 26885326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 79 - 251
Target Start/End: Complemental strand, 26863011 - 26862839
Alignment:
Q  79 cctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatctggtagatctttttattgggaa 178  Q
    |||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||   | ||||| |||||||||||    
T  26863011 cctttgaaacaacaagcaatatctagaaagacactttgctgctcttcttccaaagcatcatagcttactttaagtatcctttggatctctttattgggaa 26862912  T
Q  179 tcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaagttggaacccactatttc 251  Q
    |||||||||| ||||||||||| |  | ||||||||| || ||||||||||||||||| ||||||||||||||    
T  26862911 tcttttcatacccatctaatgtgcattgccattcttccatgctctttccaaacaagttagaacccactatttc 26862839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 28 - 251
Target Start/End: Original strand, 27426312 - 27426535
Alignment:
Q  28 caatggccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttctt 127  Q
    ||||| |||||||||| ||||||||| | |||| | | |||||||| ||| ||||||||||||||||||||||| |||||||||||||||| |||||| |    
T  27426312 caatgaccataatgagcatgaagtatttctttgaccttttcccatttacaacctttgaagcaacaagcaatgtctagaaagacactttgctcctcttcct 27426411  T
Q  128 ccaaagcatcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttcc 227  Q
    |||||| |||||| || |||||||||||    | ||||| ||||||||||||||||||||| | ||||||||||  ||| |||||||| ||  |||||||    
T  27426412 ccaaagaatcatagctcactttaagtattctttggatctctttattgggaatcttttcataccaatctaatgtattcttgcattcttctatgttctttcc 27426511  T
Q  228 aaacaagttggaacccactatttc 251  Q
    ||||||||| ||||||||||||||    
T  27426512 aaacaagttagaacccactatttc 27426535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 69 - 251
Target Start/End: Complemental strand, 26624712 - 26624530
Alignment:
Q  69 ccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatctggtagatcttt 168  Q
    |||| ||||||||||  ||||||||||||| || ||||||||||| |||| ||||||||||||||||||||| || |||||||||||||  | ||||| |    
T  26624712 ccatccacatcctttcgagcaacaagcaatatctagaaagacactctgctcctcttcttccaaagcatcatagctcactttaagtatcttttggatctct 26624613  T
Q  169 ttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaagttggaacccactatttc 251  Q
    |||||||||||| | ||||| ||||||||||||  |||||||||||| || |||||||||||||||||||||||||| |||||    
T  26624612 ttattgggaatcctgtcatacccatctaatgtatacttccattcttctatgctctttccaaacaagttggaacccacaatttc 26624530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 69 - 251
Target Start/End: Complemental strand, 26730689 - 26730507
Alignment:
Q  69 ccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatctggtagatcttt 168  Q
    |||| ||||||||||  ||||||||||||| || ||||||||||| |||| ||||||||||||||||||||| || |||||||||||||  | ||||| |    
T  26730689 ccatccacatcctttcgagcaacaagcaatatctagaaagacactctgctcctcttcttccaaagcatcatagctcactttaagtatcttttggatctct 26730590  T
Q  169 ttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaagttggaacccactatttc 251  Q
    |||||||||||| | ||||| ||||||||||||  |||||||||||| || |||||||||||||||||||||||||| |||||    
T  26730589 ttattgggaatcctgtcatacccatctaatgtatacttccattcttctatgctctttccaaacaagttggaacccacaatttc 26730507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 75 - 247
Target Start/End: Complemental strand, 26657397 - 26657225
Alignment:
Q  75 acatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatctggtagatctttttattg 174  Q
    ||||||||||||  ||||||| || || | |||||||||||||| |||||| |||||| ||||||| ||||||||||||||||  |  ||||||||||||    
T  26657397 acatcctttgaaaaaacaagctatatctaaaaagacactttgctcctcttcctccaaatcatcatagcttactttaagtatctcttgaatctttttattg 26657298  T
Q  175 ggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaagttggaacccacta 247  Q
    |||||||||||||||||||||||||||| |||||||| ||| || ||||||||||||||||| ||| ||||||    
T  26657297 ggaatcttttcatatccatctaatgtactcttccatttttcgatgctctttccaaacaagtttgaagccacta 26657225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 75 - 247
Target Start/End: Complemental strand, 26763368 - 26763196
Alignment:
Q  75 acatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatctggtagatctttttattg 174  Q
    ||||||||||||  ||||||| || || | |||||||||||||| |||||| |||||| ||||||| ||||||||||||||||  |  ||||||||||||    
T  26763368 acatcctttgaaaaaacaagctatatctaaaaagacactttgctcctcttcctccaaatcatcatagcttactttaagtatctcttgaatctttttattg 26763269  T
Q  175 ggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaagttggaacccacta 247  Q
    |||||||||||||||||||||||||||| |||||||| ||| || ||||||||||||||||| ||| ||||||    
T  26763268 ggaatcttttcatatccatctaatgtactcttccatttttcgatgctctttccaaacaagtttgaagccacta 26763196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 80 - 251
Target Start/End: Complemental strand, 26825249 - 26825078
Alignment:
Q  80 ctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatctggtagatctttttattgggaat 179  Q
    |||||||||||||||||||||| || || |||||||| ||||||||||||||||||||||| |||||| |||||||||  | ||||||||| |  |||||    
T  26825249 ctttgaagcaacaagcaatgtcgaggaaaacactttgttgctcttcttccaaagcatcatagcttactctaagtatctcttggatctttttgtcaggaat 26825150  T
Q  180 cttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaagttggaacccactatttc 251  Q
    | |||||||||||||||||| ||||||||||  ||  || |||||||||||||| |||||||||||||||||    
T  26825149 cctttcatatccatctaatgcacccttccatatttgtatgctctttccaaacaaattggaacccactatttc 26825078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 77 - 247
Target Start/End: Complemental strand, 27680383 - 27680213
Alignment:
Q  77 atcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatctggtagatctttttattggg 176  Q
    ||||||||||||| ||||| ||||| ||||||||||| |||| ||||||||||||||||||||| || || ||||||||||  | ||||| |||||||||    
T  27680383 atcctttgaagcagcaagcgatgtcaagaaagacactctgctcctcttcttccaaagcatcatagctcaccttaagtatcttttggatctctttattggg 27680284  T
Q  177 aatcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaagttggaacccacta 247  Q
    |||| | ||||| ||||||||||||  |||||| ||||| || ||||||||||||||||| ||||||||||    
T  27680283 aatcctgtcatacccatctaatgtatgcttccaatcttctatgctctttccaaacaagttagaacccacta 27680213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 79 - 244
Target Start/End: Original strand, 27705005 - 27705170
Alignment:
Q  79 cctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatctggtagatctttttattgggaa 178  Q
    ||||| ||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||| || ||| |||||||||  | ||||| |||||||||||    
T  27705005 ccttttaagcaacaagcaatgtcaagaaagacactctgctcctcttcttccaaagcatcatagctcactctaagtatcttttggatctctttattgggaa 27705104  T
Q  179 tcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaagttggaaccca 244  Q
    || | ||||| ||||||||||||  |||||||||||| ||  |||| ||||||||||| |||||||    
T  27705105 tcctgtcatacccatctaatgtattcttccattcttctatgttcttgccaaacaagttagaaccca 27705170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 28 - 233
Target Start/End: Original strand, 25492019 - 25492224
Alignment:
Q  28 caatggccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttctt 127  Q
    |||||||||||||||  ||||||||||| |||| ||||  ||||||  || ||||||||| ||||||  ||||| ||||||| ||| |||| || ||| |    
T  25492019 caatggccataatgatcatgaagtatatttttgacatccgcccatttccaacctttgaagaaacaagtcatgtctagaaagatactctgctccttttcct 25492118  T
Q  128 ccaaagcatcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttcc 227  Q
    ||||||||||||| || ||| |||||||||  | ||||| |||||||  ||||||||||||  |||||||||||| |||||||||||| || || |||||    
T  25492119 ccaaagcatcatagctcactctaagtatcttttggatctctttattgaaaatcttttcatactcatctaatgtacacttccattcttctatgctatttcc 25492218  T
Q  228 aaacaa 233  Q
    ||||||    
T  25492219 aaacaa 25492224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 239
Target Start/End: Complemental strand, 27215934 - 27215723
Alignment:
Q  28 caatggccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttctt 127  Q
    |||||||||||||| | ||||||||||| |||| | | |  ||||| ||| ||||||||||||||||||||||| ||||||||||| | || || ||| |    
T  27215934 caatggccataatgggcatgaagtatatctttgacctttgtccatttacaccctttgaagcaacaagcaatgtctagaaagacactcttctccttttcct 27215835  T
Q  128 ccaaagcatcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttcc 227  Q
    ||| ||||||||| || ||||||||||||   | ||||| |||||||||||||||||||||  |||||||| |||  | ||| ||||| |  ||| ||||    
T  27215834 ccagagcatcatagctgactttaagtatcctttggatctctttattgggaatcttttcatactcatctaatatacgttcccaatcttctacactccttcc 27215735  T
Q  228 aaacaagttgga 239  Q
    |||||| |||||    
T  27215734 aaacaaattgga 27215723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 27530004 - 27530178
Alignment:
Q  28 caatggccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttctt 127  Q
    ||||| |||||||||| ||||||||| | |||| | |||  ||||| ||| ||||||||||||||||||||||| ||||||||||||||||  ||||  |    
T  27530004 caatgaccataatgagcatgaagtatttctttgacctctggccatttacaccctttgaagcaacaagcaatgtctagaaagacactttgctcttctttct 27530103  T
Q  128 ccaaagcatcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtac 202  Q
    |||||| |||||| || |||||||||||    | ||||| |||||||||||| | |||||| |||||||||||||    
T  27530104 ccaaagaatcatagctcactttaagtattctttggatctctttattgggaatttcttcatacccatctaatgtac 27530178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 79 - 233
Target Start/End: Complemental strand, 29827417 - 29827263
Alignment:
Q  79 cctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatctggtagatctttttattgggaa 178  Q
    ||||||||||||||||||||||| ||||| |||| ||| |  ||||| |||||||||||| |||||| ||||||||| |  | ||||| |||||| ||||    
T  29827417 cctttgaagcaacaagcaatgtcgagaaaaacaccttgttcatcttcctccaaagcatcaaaacttattttaagtatattttggatctctttattaggaa 29827318  T
Q  179 tcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaa 233  Q
    || ||||||||| ||||||| ||   ||||||||||| ||  |||||||||||||    
T  29827317 tcctttcatatctatctaatatagatttccattcttctatattctttccaaacaa 29827263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 79 - 233
Target Start/End: Original strand, 29842743 - 29842897
Alignment:
Q  79 cctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatctggtagatctttttattgggaa 178  Q
    ||||||||||||||||||||||| ||||| |||| ||| |  ||||| |||||||||||| | |||| ||||||||| | || ||||| |||||| ||||    
T  29842743 cctttgaagcaacaagcaatgtcgagaaaaacaccttgttcgtcttcctccaaagcatcaaagcttattttaagtatattgtggatctctttattaggaa 29842842  T
Q  179 tcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaa 233  Q
    || ||||||| | ||||||||||   ||||||||||| ||  |||||||||||||    
T  29842843 tcctttcatacctatctaatgtagatttccattcttctatattctttccaaacaa 29842897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 233
Target Start/End: Complemental strand, 25581204 - 25580999
Alignment:
Q  28 caatggccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttctt 127  Q
    |||||||||||||||| ||||||||| | |||  | | |  ||||| ||| ||||||||||||||||||||||| ||||||||||| | || || |  ||    
T  25581204 caatggccataatgagcatgaagtatttttttaacctttgtccatttacaccctttgaagcaacaagcaatgtctagaaagacactcttctcctttggtt 25581105  T
Q  128 ccaaagcatcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttcc 227  Q
    ||||||||||||| || |||| |||||||   | ||| | |||||||||||| ||||||||  |||||||| ||| |||||| ||||| | | || ||||    
T  25581104 ccaaagcatcatagctaacttgaagtatcctttggatatctttattgggaatattttcatactcatctaatatacgcttccaatcttctaccttccttcc 25581005  T
Q  228 aaacaa 233  Q
    ||||||    
T  25581004 aaacaa 25580999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 233
Target Start/End: Complemental strand, 26144350 - 26144145
Alignment:
Q  28 caatggccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttctt 127  Q
    |||||||||||||||| ||||||||| | |||  | | |  ||||||||| ||||||||||||||||||||||| ||||||||||| || | || ||| |    
T  26144350 caatggccataatgagcatgaagtatttttttaacctttgtccattcacaccctttgaagcaacaagcaatgtctagaaagacactctgatccttttcct 26144251  T
Q  128 ccaaagcatcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttcc 227  Q
     |||||||||||| ||||||| |||||||   | ||| | ||||| |||||| ||||||||  | |||||||||| || ||| ||||| | | || ||||    
T  26144250 tcaaagcatcatagcttacttgaagtatcctttggatatctttatcgggaatattttcatactcgtctaatgtacgctcccaatcttctaccttccttcc 26144151  T
Q  228 aaacaa 233  Q
    ||||||    
T  26144150 aaacaa 26144145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 247
Target Start/End: Original strand, 27591727 - 27591940
Alignment:
Q  34 ccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaag 133  Q
    |||||||||| ||||||||| | |||| | |  ||| ||  ||||||||||| |||||||||||| |||| ||||||||| |||| ||||||||||||||    
T  27591727 ccataatgagcatgaagtatctgtttgactttctccaatctacatcctttgatgcaacaagcaatatccaaaaagacactctgctcctcttcttccaaag 27591826  T
Q  134 catcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaa 233  Q
    ||||||| || | | |||||||||  | ||| | |||||  |||||  || ||||   ||||||||||  ||  |||||| |||| ||||||||||||||    
T  27591827 catcatagctgagtctaagtatcttttggatatctttatgtggaattcttccatacttatctaatgtagactcacattctgcaatactctttccaaacaa 27591926  T
Q  234 gttggaacccacta 247  Q
    ||| ||||||||||    
T  27591927 gttagaacccacta 27591940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 238
Target Start/End: Complemental strand, 25512373 - 25512163
Alignment:
Q  28 caatggccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttctt 127  Q
    |||||||||||||||| ||||||||| | |||  | | |  ||||| | | ||||||||| ||||||||||||| ||||||||||| || | || ||| |    
T  25512373 caatggccataatgagcatgaagtattttttttacttttgtccatttataccctttgaagtaacaagcaatgtctagaaagacactctgatccttttcct 25512274  T
Q  128 ccaaagcatcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttcc 227  Q
     |||||||||||| ||||||| |||||||   | ||| | ||||| |||||| ||||||||  |||||||||||| |||||| ||||| | | || ||||    
T  25512273 tcaaagcatcatagcttacttgaagtatcctttggatatctttatcgggaatattttcatactcatctaatgtacgcttccaatcttctaccttccttcc 25512174  T
Q  228 aaacaagttgg 238  Q
    |||||| ||||    
T  25512173 aaacaaattgg 25512163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 233
Target Start/End: Complemental strand, 25484541 - 25484336
Alignment:
Q  28 caatggccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttctt 127  Q
    |||||||||||||||| ||||||||| | |||  | | |  ||||| | | ||||||||| ||||||||||||| ||||||||||| || | || ||| |    
T  25484541 caatggccataatgagcatgaagtattttttttacttttgtccatttataccctttgaagtaacaagcaatgtctagaaagacactctgatccttttcct 25484442  T
Q  128 ccaaagcatcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttcc 227  Q
     |||||||||||| ||||||| |||||||   | ||| | ||||| |||||| ||||||||  |||||||||||| |||||| ||||| | | || ||||    
T  25484441 tcaaagcatcatagcttacttgaagtatcctttggatatctttatcgggaatattttcatactcatctaatgtacgcttccaatcttctaccttccttcc 25484342  T
Q  228 aaacaa 233  Q
    ||||||    
T  25484341 aaacaa 25484336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 247
Target Start/End: Original strand, 27676326 - 27676539
Alignment:
Q  34 ccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaag 133  Q
    |||||||||  ||||||||| | || | | |||||| ||  ||||||||||| |||||||||||| |||| ||||||||| |||| |||||| |||||||    
T  27676326 ccataatgatgatgaagtatctgttcgacttcttccaatctacatcctttgatgcaacaagcaatatccaaaaagacactctgctcctcttcgtccaaag 27676425  T
Q  134 catcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaa 233  Q
    ||||||| || | | |||||||||  | ||| | |||||  |||||  || ||||   ||||||||||  ||  |||||| |||| ||||||||||||||    
T  27676426 catcatagctcagtctaagtatcttttggatatctttatgtggaattcttccatacttatctaatgtagactcacattctgcaatactctttccaaacaa 27676525  T
Q  234 gttggaacccacta 247  Q
    ||| ||||||||||    
T  27676526 gttagaacccacta 27676539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 247
Target Start/End: Complemental strand, 28326954 - 28326741
Alignment:
Q  34 ccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaag 133  Q
    |||||||||| ||||||||||| ||     |||| | ||||| |||| |||||||| ||||||||||| ||||| ||| | ||||  ||||| |||||||    
T  28326954 ccataatgagcatgaagtatatcttcaagttctttcaattcatatccattgaagcagcaagcaatgtcgagaaaaacattctgctcatcttcatccaaag 28326855  T
Q  134 catcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaa 233  Q
    ||||| | |||||||||||||||   | |||||||||| |||||||| |||||||   || ||||| |   || |||||| | ||  |||||||||||||    
T  28326854 catcaaagcttactttaagtatcgcttggatctttttaatgggaatcctttcatactgatataatgcagatttacattctactatattctttccaaacaa 28326755  T
Q  234 gttggaacccacta 247  Q
    ||||||||||||||    
T  28326754 gttggaacccacta 28326741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 247
Target Start/End: Complemental strand, 28504590 - 28504377
Alignment:
Q  34 ccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaag 133  Q
    |||||||||| ||||||||||| ||     |||| | ||||| |||| |||||||| ||||||||||| ||||| ||| | ||||  ||||| |||||||    
T  28504590 ccataatgagcatgaagtatatcttcaagttctttcaattcatatccattgaagcagcaagcaatgtcgagaaaaacattctgctcatcttcatccaaag 28504491  T
Q  134 catcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaa 233  Q
    ||||| | |||||||||||||||   | |||||||||| |||||||| |||||||   || ||||| |   || |||||| | ||  |||||||||||||    
T  28504490 catcaaagcttactttaagtatcgcttggatctttttaatgggaatcctttcatactgatataatgcagatttacattctactatattctttccaaacaa 28504391  T
Q  234 gttggaacccacta 247  Q
    ||||||||||||||    
T  28504390 gttggaacccacta 28504377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 157
Target Start/End: Original strand, 27663959 - 27664043
Alignment:
Q  73 tcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatct 157  Q
    |||||||||||||||||||||||||| |||| ||||||||| || || ||||||||||||| |||| | ||||||||||||||||    
T  27663959 tcacatcctttgaagcaacaagcaatatccaaaaagacactctgttgttcttcttccaaagtatcaaagcttactttaagtatct 27664043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 247
Target Start/End: Complemental strand, 28186833 - 28186657
Alignment:
Q  71 attcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatctggtagatcttttt 170  Q
    ||||| ||||||||||||| ||||| ||||| ||||| ||| |||| |   ||||  ||||||||||| | |||||||| |||||||  | |||||||||    
T  28186833 attcatatcctttgaagcagcaagcgatgtcgagaaaaacattttgttctgcttcccccaaagcatcaaagcttactttgagtatctcttggatcttttt 28186734  T
Q  171 attgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaagttggaacccacta 247  Q
    || ||||||| |||||||   || ||||| |   ||||||||| | ||  |||||||||||||||||||||||||||    
T  28186733 atcgggaatcctttcatactgatttaatgcagatttccattctcctatattctttccaaacaagttggaacccacta 28186657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 156
Target Start/End: Complemental strand, 26057402 - 26057276
Alignment:
Q  30 atggccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttcc 129  Q
    |||||||||||||| ||||||||| | |||  | | |  ||||| ||| ||||||||||||||||||||||| ||||||||||| || | || ||| | |    
T  26057402 atggccataatgagcatgaagtatttttttaacctttgtccatttacaccctttgaagcaacaagcaatgtctagaaagacactctgatccttttccttc 26057303  T
Q  130 aaagcatcataacttactttaagtatc 156  Q
    ||||||||||| ||||||| |||||||    
T  26057302 aaagcatcatagcttacttgaagtatc 26057276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 156
Target Start/End: Complemental strand, 26077372 - 26077246
Alignment:
Q  30 atggccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttcc 129  Q
    |||||||||||||| ||||||||| | |||  | | |  ||||| ||| ||||||||||||||||||||||| ||||||||||| || | || ||| | |    
T  26077372 atggccataatgagcatgaagtatttttttaacctttgtccatttacaccctttgaagcaacaagcaatgtctagaaagacactctgatccttttccttc 26077273  T
Q  130 aaagcatcataacttactttaagtatc 156  Q
    ||||||||||| ||||||| |||||||    
T  26077272 aaagcatcatagcttacttgaagtatc 26077246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 247
Target Start/End: Original strand, 28296446 - 28296659
Alignment:
Q  34 ccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaag 133  Q
    |||||||||| ||||||||||| ||     |||| | ||||| ||||||||||||| ||||| ||||| ||||| ||| ||| ||  ||||| |||||||    
T  28296446 ccataatgagcatgaagtatattttcaagttctttcaattcatatcctttgaagcagcaagcgatgtcaagaaaaacatttttctcatcttcctccaaag 28296545  T
Q  134 catcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaa 233  Q
    ||||| | ||||||||||||||||  | ||||||| || ||||  || |||||||   |  ||||| |   |||||||||   ||  |||||||||||||    
T  28296546 catcaaagcttactttaagtatctcttggatctttctaatgggtctcctttcatactgacttaatgcagatttccattctcttatattctttccaaacaa 28296645  T
Q  234 gttggaacccacta 247  Q
    ||||||||||||||    
T  28296646 gttggaacccacta 28296659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 247
Target Start/End: Complemental strand, 28515627 - 28515414
Alignment:
Q  34 ccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaag 133  Q
    |||||||||| ||||||||||| ||     |||| | ||||| ||||||||||||| ||||| ||||| ||||| ||| ||| ||  ||||| |||||||    
T  28515627 ccataatgagcatgaagtatattttcaagttctttcaattcatatcctttgaagcagcaagcgatgtcaagaaaaacatttttctcatcttcctccaaag 28515528  T
Q  134 catcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaa 233  Q
    ||||| | ||||||||||||||||  | ||||||| || ||||  || |||||||   |  ||||| |   |||||||||   ||  |||||||||||||    
T  28515527 catcaaagcttactttaagtatctcttggatctttctaatgggtctcctttcatactgacttaatgcagatttccattctcttatattctttccaaacaa 28515428  T
Q  234 gttggaacccacta 247  Q
    ||||||||||||||    
T  28515427 gttggaacccacta 28515414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 251
Target Start/End: Original strand, 27336930 - 27337018
Alignment:
Q  163 atctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaagttggaacccactatttc 251  Q
    |||| ||||||||||||| | ||||| |||||||||||   ||||||| |||| ||  |||||||||||||||| ||||||||||||||    
T  27336930 atctctttattgggaatcctgtcatacccatctaatgtgttcttccatacttctatgttctttccaaacaagttagaacccactatttc 27337018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 251
Target Start/End: Original strand, 27397670 - 27397758
Alignment:
Q  163 atctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaagttggaacccactatttc 251  Q
    |||| ||||||||||||| | ||||| |||||||||||   ||||||| |||| ||  |||||||||||||||| ||||||||||||||    
T  27397670 atctctttattgggaatcctgtcatacccatctaatgtgttcttccatacttctatgttctttccaaacaagttagaacccactatttc 27397758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 247
Target Start/End: Complemental strand, 28244228 - 28244058
Alignment:
Q  77 atcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatctggtagatctttttattggg 176  Q
    ||||||||||||| ||||||||||| ||||| ||| | ||||  ||||  |||||||||||| | ||||||||||||||||  |  ||||||||| | ||    
T  28244228 atcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcgg 28244129  T
Q  177 aatcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaagttggaacccacta 247  Q
    |||| ||  ||| | |||||||| |   ||||||||| | ||  | |||||||| ||||| ||||||||||    
T  28244128 aatccttctataccgatctaatgcagatttccattctcctatattatttccaaataagtttgaacccacta 28244058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 157
Target Start/End: Complemental strand, 26978800 - 26978733
Alignment:
Q  90 acaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatct 157  Q
    ||||||||| |||| ||||||||| || || ||||| |||||||||||| | ||||||||||||||||    
T  26978800 acaagcaatatccaaaaagacactctgttgttcttcgtccaaagcatcaaagcttactttaagtatct 26978733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 188
Target Start/End: Complemental strand, 28240778 - 28240679
Alignment:
Q  85 aagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatctggtagatctttttattgggaatctttt 184  Q
    ||||||||||||||||| ||||| ||||||||||  ||||  |||||||||||| |    |||||||||||||  | ||||| |||||| |||||| |||    
T  28240778 aagcaacaagcaatgtcgagaaaaacactttgctcatctttctccaaagcatcaaa----actttaagtatcttttggatctctttatttggaatccttt 28240683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 233
Target Start/End: Complemental strand, 25539924 - 25539820
Alignment:
Q  129 caaagcatcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttcca 228  Q
    |||||||||||| ||||||| |||||||   | ||| | ||||| |||||| ||||||||  |||||||||||| |||||| ||||| | | || |||||    
T  25539924 caaagcatcatagcttacttgaagtatcctttggatatctttatcgggaatattttcatactcatctaatgtacgcttccaatcttctaccttccttcca 25539825  T
Q  229 aacaa 233  Q
    |||||    
T  25539824 aacaa 25539820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 26812827 - 26812791
Alignment:
Q  211 tcttcaatcctctttccaaacaagttggaacccacta 247  Q
    |||||||| ||||||||||||||||||||||||||||    
T  26812827 tcttcaatactctttccaaacaagttggaacccacta 26812791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 26850014 - 26849975
Alignment:
Q  208 cattcttcaatcctctttccaaacaagttggaacccacta 247  Q
    |||||||| || ||||||||||||||||||||||||||||    
T  26850014 cattcttctatactctttccaaacaagttggaacccacta 26849975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 157
Target Start/End: Complemental strand, 26960545 - 26960478
Alignment:
Q  90 acaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatct 157  Q
    ||||||||| |||| ||||||||| || || |||||  ||||||| ||||| ||||||||||||||||    
T  26960545 acaagcaatatccaaaaagacactctgttgttcttcagccaaagcgtcatagcttactttaagtatct 26960478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 180
Target Start/End: Complemental strand, 28182542 - 28182439
Alignment:
Q  77 atcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatctggtagatctttttattggg 176  Q
    ||||||| ||| |||||| |||||||||||| ||| | ||||  || || |||| ||||||||| || |||||||||||||  | |||||||||  ||||    
T  28182542 atccttttaagaaacaagaaatgtccagaaaaacattctgctcatcatcctccagagcatcatagctaactttaagtatctcttggatctttttcatggg 28182443  T
Q  177 aatc 180  Q
    ||||    
T  28182442 aatc 28182439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 155
Target Start/End: Complemental strand, 25075288 - 25075222
Alignment:
Q  89 aacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtat 155  Q
    |||||||||| |||| ||||||||| || || ||||| |||||||| ||| | ||||||||||||||    
T  25075288 aacaagcaatatccaaaaagacactctgttgttcttcgtccaaagcgtcaaagcttactttaagtat 25075222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 143
Target Start/End: Original strand, 28097194 - 28097258
Alignment:
Q  79 cctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataact 143  Q
    ||||||||||||||||||||||| ||||| |||||   ||  ||||| |||||||||||| ||||    
T  28097194 cctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaaact 28097258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 28140968 - 28140888
Alignment:
Q  77 atcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatct 157  Q
    ||||| |||| |||||||||||||| ||||| ||||||||||  ||||  ||||||  |||| | || |||||||||||||    
T  28140968 atcctctgaaacaacaagcaatgtcgagaaaaacactttgctcatctttctccaaactatcaaagctcactttaagtatct 28140888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 31 - 251
Target Start/End: Original strand, 267043 - 267263
Alignment:
Q  31 tggccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttcca 130  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||| |||| |||||||||||    
T  267043 tggccataatgagaatgaagtatatgtttggcatcttcccattcatatcctttgaagcaacaagcaatgtctaaaaagacactctgctcctcttcttcca 267142  T
Q  131 aagcatcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaa 230  Q
    || ||||||| || |||||||||||||  | ||||| ||||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||    
T  267143 aaccatcatagctcactttaagtatcttttggatctctttattgggaatcttatcatacccatctaatgtacccttccattcttctatgctctttccaaa 267242  T
Q  231 caagttggaacccactatttc 251  Q
    |||||| |||||||| |||||    
T  267243 caagttagaacccacaatttc 267263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 82 - 251
Target Start/End: Original strand, 28132255 - 28132424
Alignment:
Q  82 ttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatctggtagatctttttattgggaatct 181  Q
    |||||||||||||| || ||||||||||||||||||| |||||| ||||||||||| ||||||||||||| |||||  | |||||||||||| |||||||    
T  28132255 ttgaagcaacaagctatatccagaaagacactttgctcctcttcctccaaagcatcgtaacttactttaaatatctcatggatctttttattaggaatct 28132354  T
Q  182 tttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaagttggaacccactatttc 251  Q
    ||||||||||||||||||||| |||||||||||| || ||||||||||| ||||| ||||||||||||||    
T  28132355 tttcatatccatctaatgtacacttccattcttctatgctctttccaaataagtttgaacccactatttc 28132424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 79 - 251
Target Start/End: Original strand, 28126426 - 28126598
Alignment:
Q  79 cctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatctggtagatctttttattgggaa 178  Q
    ||||||||||| ||||| || || ||||||||||||||||  ||||| |||||||||||||| |||| ||||| |||||  | |||||||||||| ||||    
T  28126426 cctttgaagcagcaagctatatcgagaaagacactttgctcatcttcctccaaagcatcatagcttagtttaaatatctcttggatctttttatttggaa 28126525  T
Q  179 tcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaagttggaacccactatttc 251  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||    
T  28126526 tcttttcatatccatctaatgtacccttccattcttctatgctctttccaaataagttggaacccactatttc 28126598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 155
Target Start/End: Complemental strand, 26137319 - 26137243
Alignment:
Q  79 cctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtat 155  Q
    |||||||||||||||||||| |||| ||| |||||||| || ||||| |||||||||||||| |||||| |||||||    
T  26137319 cctttgaagcaacaagcaatatccaaaaatacactttgttgttcttcgtccaaagcatcatagcttactctaagtat 26137243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 5922218 - 5922279
Alignment:
Q  77 atcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatca 138  Q
    |||||||||||||||||||||| || ||||| ||||||| ||  ||||||||||||||||||    
T  5922218 atcctttgaagcaacaagcaatatcaagaaaaacacttttctcttcttcttccaaagcatca 5922279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 69 - 251
Target Start/End: Complemental strand, 210 - 28
Alignment:
Q  69 ccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatctggtagatcttt 168  Q
    |||| ||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| || |||||||    
T  210 ccatccacatcctttgaagcaacaggcaatgtctagaaaaacactttgctgctcttcctccaaagcatcatagcttactttaagtatctcgtggatcttt 111  T
Q  169 ttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaagttggaacccactatttc 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  110 ttattgggaatcttttcatatccatctaatgtacccttccattcttctatcgtctttccaaacaagttggaacccactatttc 28  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 28 - 251
Target Start/End: Original strand, 2239 - 2462
Alignment:
Q  28 caatggccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttctt 127  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||| |    
T  2239 caatggccataatgagaattaagtatatatttggcatcttcccatttacatcttttgaagcaacaagcaatgtctagaaagacactttgctgctcttcct 2338  T
Q  128 ccaaagcatcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttcc 227  Q
    ||||||||||||||||||||||||||||||  | ||||| ||||||||||||| | ||||| ||||||||||||  ||||||||| || ||  |||||||    
T  2339 ccaaagcatcataacttactttaagtatcttttggatctctttattgggaatcctgtcatacccatctaatgtattcttccattcctctatgttctttcc 2438  T
Q  228 aaacaagttggaacccactatttc 251  Q
    | | ||||| ||||||||||||||    
T  2439 agataagttagaacccactatttc 2462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 28 - 251
Target Start/End: Complemental strand, 61051 - 60828
Alignment:
Q  28 caatggccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttctt 127  Q
    ||||| |||||||||| ||||||||| | |||| | | |||||||| ||| ||||||||||||||||||||||| |||||||||||||||| |||||| |    
T  61051 caatgaccataatgagcatgaagtatttctttgaccttttcccatttacaacctttgaagcaacaagcaatgtctagaaagacactttgctcctcttcct 60952  T
Q  128 ccaaagcatcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttcc 227  Q
    |||||| |||||| || |||||||||||    | ||||| ||||||||||||||||||||| | ||||||||||  ||| |||||||| ||  |||||||    
T  60951 ccaaagaatcatagctcactttaagtattctttggatctctttattgggaatcttttcataccaatctaatgtattcttgcattcttctatgttctttcc 60852  T
Q  228 aaacaagttggaacccactatttc 251  Q
    ||||||||| ||||||||||||||    
T  60851 aaacaagttagaacccactatttc 60828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 28 - 251
Target Start/End: Complemental strand, 18075243 - 18075020
Alignment:
Q  28 caatggccataatgagaatgaagtatatatttggcatcttcccattcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttctt 127  Q
    ||||| |||||||||| ||||||||| | |||| | | |||||||| ||| ||||||||||||||||||||||| |||||||||||||||| |||||| |    
T  18075243 caatgaccataatgagcatgaagtatttctttgaccttttcccatttacaacctttgaagcaacaagcaatgtctagaaagacactttgctcctcttcct 18075144  T
Q  128 ccaaagcatcataacttactttaagtatctggtagatctttttattgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttcc 227  Q
    |||||| |||||| || |||||||||||    | ||||| ||||||||||||||||||||| | ||||||||||  ||| |||||||| ||  |||||||    
T  18075143 ccaaagaatcatagctcactttaagtattctttggatctctttattgggaatcttttcataccaatctaatgtattcttgcattcttctatgttctttcc 18075044  T
Q  228 aaacaagttggaacccactatttc 251  Q
    ||||||||| ||||||||||||||    
T  18075043 aaacaagttagaacccactatttc 18075020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 75 - 247
Target Start/End: Original strand, 18722828 - 18723000
Alignment:
Q  75 acatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatctggtagatctttttattg 174  Q
    ||||||||||||| |||||||||| |||| |||||||||||| || |||||  ||||||||||| | ||||||||||||||||  | ||| | || ||      
T  18722828 acatcctttgaagaaacaagcaatatccaaaaagacactttgttgttcttcgcccaaagcatcaaagcttactttaagtatcttttggatatcttcatct 18722927  T
Q  175 ggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaagttggaacccacta 247  Q
    |||||  |||||||   ||||||||||  ||  |||||| |||| ||||||||||||||||||||||||||||    
T  18722928 ggaattctttcatacatatctaatgtagactcacattctgcaatactctttccaaacaagttggaacccacta 18723000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 75 - 245
Target Start/End: Original strand, 18654220 - 18654390
Alignment:
Q  75 acatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatctggtagatctttttattg 174  Q
    ||||||||||||  |||||||||| |||| |||||||||||| || ||||| |||||||||||| ||||||||||||||||||  | ||| | || ||      
T  18654220 acatcctttgaacaaacaagcaatatccaaaaagacactttgttgttcttcatccaaagcatcaaaacttactttaagtatcttttggatatcttcatgt 18654319  T
Q  175 ggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaagttggaacccac 245  Q
    |||||  |||||||   ||||||||||   |  |||||| |||| ||||||||||||||||||||||||||    
T  18654320 ggaattctttcatacttatctaatgtagattcacattctgcaatactctttccaaacaagttggaacccac 18654390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 75 - 247
Target Start/End: Original strand, 18688369 - 18688541
Alignment:
Q  75 acatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatctggtagatctttttattg 174  Q
    ||||||||||||| |||||||||| |||| |||||||||||| || ||||| |||||||||||| | ||||||||||||||||  | ||| | ||  ||     
T  18688369 acatcctttgaagaaacaagcaatatccaaaaagacactttgttgttcttcgtccaaagcatcaaagcttactttaagtatcttttggatatcttcgttt 18688468  T
Q  175 ggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaagttggaacccacta 247  Q
    |||||  ||| |||   ||||||||||  ||  ||||||  ||| ||||||||||||||||||||||||||||    
T  18688469 ggaattctttgatacttatctaatgtagactcacattctgaaatactctttccaaacaagttggaacccacta 18688541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 75 - 247
Target Start/End: Original strand, 18698143 - 18698315
Alignment:
Q  75 acatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatctggtagatctttttattg 174  Q
    ||||||||||||| |||||||||| |||| |||||||||||| || ||||| |||||||||||| | ||||||||||||||||  | ||| | || ||      
T  18698143 acatcctttgaagaaacaagcaatatccaaaaagacactttgttgttcttcgtccaaagcatcaaagcttactttaagtatcttttggatatcttcatgt 18698242  T
Q  175 ggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaagttggaacccacta 247  Q
    |||||  |||||||   ||||||||||   |  |||||| |||  ||||||||||||||||||||||||||||    
T  18698243 ggaattctttcatacttatctaatgtagagtcacattctgcaaaactctttccaaacaagttggaacccacta 18698315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 75 - 247
Target Start/End: Original strand, 18730247 - 18730419
Alignment:
Q  75 acatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatctggtagatctttttattg 174  Q
    ||||||||||||| |||||||||| |||| |||||||||||| || ||||| |||||||||||| | ||||||||||||||||  | ||| | || ||      
T  18730247 acatcctttgaagaaacaagcaatatccaaaaagacactttgttgttcttcgtccaaagcatcaaagcttactttaagtatcttttggatatcttcatgt 18730346  T
Q  175 ggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaagttggaacccacta 247  Q
    |||||  |||||||   ||||||||||   |  |||||| |||  ||||||||||||||||||||||||||||    
T  18730347 ggaattctttcatacttatctaatgtagaatcacattctgcaaaactctttccaaacaagttggaacccacta 18730419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 247
Target Start/End: Original strand, 18678303 - 18678475
Alignment:
Q  75 acatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatctggtagatctttttattg 174  Q
    ||||||||||||| |||||||||| |||| ||||||| |||| || ||||| |||||||||||| | ||||||||||||||||  | ||| | || ||      
T  18678303 acatcctttgaagaaacaagcaatatccaaaaagacaatttgttgttcttcgtccaaagcatcaaagcttactttaagtatcttttggatatcttcatgt 18678402  T
Q  175 ggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaagttggaacccacta 247  Q
    |||||  |||||||   ||||||||||  ||  ||||||  |||  |||||||||||||||||||||||||||    
T  18678403 ggaattctttcatacttatctaatgtagactcacattctgaaatattctttccaaacaagttggaacccacta 18678475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 79 - 190
Target Start/End: Complemental strand, 3281090 - 3280979
Alignment:
Q  79 cctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatctggtagatctttttattgggaa 178  Q
    ||||| ||||||||||||||||| ||||| ||||||||||  ||||| |||||||||||| |||| |||||||||||||  |  |||| |||||| ||||    
T  3281090 cctttaaagcaacaagcaatgtcgagaaaaacactttgctcgtcttcctccaaagcatcaaaactcactttaagtatcttctgaatctctttattaggaa 3280991  T
Q  179 tcttttcatatc 190  Q
    || |||||||||    
T  3280990 tcctttcatatc 3280979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 73 - 247
Target Start/End: Original strand, 57039 - 57213
Alignment:
Q  73 tcacatcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatctggtagatctttttat 172  Q
    ||||||||||  ||| |||||| |||||| ||||| ||| | | ||  ||||| |||||||||||| | ||||||||||||||||  | ||||||||||     
T  57039 tcacatccttctaagaaacaagaaatgtcgagaaaaacattcttctcatcttcctccaaagcatcaaagcttactttaagtatctcttggatctttttaa 57138  T
Q  173 tgggaatcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaagttggaacccacta 247  Q
    |||||||| |||||||   || ||||| |   ||||||||| | ||  |||||||||||||||| ||||||||||    
T  57139 tgggaatcctttcatactgatttaatgcagatttccattctcctatattctttccaaacaagttcgaacccacta 57213  T

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Target: scaffold0038 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 247
Target Start/End: Complemental strand, 44390 - 44220
Alignment:
Q  77 atcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatctggtagatctttttattggg 176  Q
    ||||||||||||| ||||||||||| ||||| ||| | ||||  ||||  |||||||||||| | ||||||||||||||||  |  ||||||||| | ||    
T  44390 atcctttgaagcagcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaagcttactttaagtatctcctgtatctttttaatcgg 44291  T
Q  177 aatcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaagttggaacccacta 247  Q
    |||| ||  ||| | |||||||| |   ||||||||| | ||  | |||||||| ||||| ||||||||||    
T  44290 aatccttctataccgatctaatgcagatttccattctcctatattatttccaaataagtttgaacccacta 44220  T

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Target: scaffold0038; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 188
Target Start/End: Complemental strand, 40940 - 40841
Alignment:
Q  85 aagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatctggtagatctttttattgggaatctttt 184  Q
    ||||||||||||||||| ||||| ||||||||||  ||||  |||||||||||| |    |||||||||||||  | ||||| |||||| |||||| |||    
T  40940 aagcaacaagcaatgtcgagaaaaacactttgctcatctttctccaaagcatcaaa----actttaagtatcttttggatctctttatttggaatccttt 40845  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 236
Target Start/End: Complemental strand, 16692300 - 16692141
Alignment:
Q  77 atcctttgaagcaacaagcaatgtccagaaagacactttgctgctcttcttccaaagcatcataacttactttaagtatctggtagatctttttattggg 176  Q
    ||||||||||||||||||||||||||| ||| ||||| |  |  ||||| ||||||  |||| |||||||||||||||| | ||  ||   ||||   ||    
T  16692300 atcctttgaagcaacaagcaatgtccaaaaaaacactcttttcatcttcctccaaactatcaaaacttactttaagtattttgtgaattcgtttaccagg 16692201  T
Q  177 aatcttttcatatccatctaatgtacccttccattcttcaatcctctttccaaacaagtt 236  Q
    ||||  |||||||| ||| ||||||   ||||||||||| ||  ||||||||||||||||    
T  16692200 aatccattcatatcgatcaaatgtagatttccattcttctatattctttccaaacaagtt 16692141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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