View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0745_low_37 (Length: 248)

Name: NF0745_low_37
Description: NF0745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0745_low_37
NF0745_low_37
[»] chr1 (2 HSPs)
chr1 (13-99)||(7100492-7100578)
chr1 (13-99)||(7580668-7580754)
[»] chr5 (15 HSPs)
chr5 (13-91)||(29873245-29873323)
chr5 (13-99)||(30061443-30061529)
chr5 (13-99)||(29854382-29854468)
chr5 (13-99)||(30337474-30337560)
chr5 (13-99)||(30750717-30750803)
chr5 (13-94)||(30401145-30401226)
chr5 (13-91)||(30207593-30207671)
chr5 (23-99)||(30676237-30676313)
chr5 (33-99)||(17417542-17417608)
chr5 (21-85)||(30520588-30520652)
chr5 (21-85)||(30560928-30560992)
chr5 (21-99)||(30241330-30241408)
chr5 (13-70)||(17983969-17984026)
chr5 (42-94)||(30476475-30476527)
chr5 (23-78)||(30712398-30712453)
[»] chr3 (1 HSPs)
chr3 (14-91)||(25292904-25292981)
[»] chr4 (2 HSPs)
chr4 (24-99)||(13617681-13617756)
chr4 (23-84)||(20295546-20295607)
[»] chr7 (1 HSPs)
chr7 (23-84)||(26708413-26708474)


Alignment Details
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 7100492 - 7100578
Alignment:
Q  13 agacggataggaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaacacctttg 99  Q
    ||||||||||||||||||||||| | || |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  7100492 agacggataggaagtcagagtcctttgcttgggtgagaagaaactcaacaatcttctctttatcatcttctcgtccaaacatctttg 7100578  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 7580754 - 7580668
Alignment:
Q  13 agacggataggaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaacacctttg 99  Q
    ||||||| |||||||| |||||||| || |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  7580754 agacggaaaggaagtccgagtccctcgcttgggtgagaagaaactcaacaatcctctctttatcatcttctcgtccaaacacctttg 7580668  T

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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 29873245 - 29873323
Alignment:
Q  13 agacggataggaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaa 91  Q
    ||||||| ||||||||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  29873245 agacggaaaggaagtcagagtccctcgcttgggtgagaagaaactcaacaatcttttctttatcatcttctcgtccaaa 29873323  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 30061443 - 30061529
Alignment:
Q  13 agacggataggaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaacacctttg 99  Q
    ||||||| ||||||||||||||||| || |||||||||||||| ||||||||||| ||||||||| |||||||||||||||| ||||    
T  30061443 agacggaaaggaagtcagagtcccttgcttgggtgagaagaaactcaacaatcttttctttatcaacttctcgtccaaacacttttg 30061529  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 29854382 - 29854468
Alignment:
Q  13 agacggataggaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaacacctttg 99  Q
    ||||||| |||||||| |||||||| |  |||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||    
T  29854382 agacggaaaggaagtctgagtccctcgtttgggtgagaagaaactcaacaatcttttctttatcatcttctcgtccaaacacttttg 29854468  T

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Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 30337560 - 30337474
Alignment:
Q  13 agacggataggaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaacacctttg 99  Q
    ||||||| ||||||||||||||| | || |||||||||||||| ||||||||||| ||||||||| |||||||||||||||| ||||    
T  30337560 agacggaaaggaagtcagagtccttcgcttgggtgagaagaaactcaacaatcttttctttatcaacttctcgtccaaacacttttg 30337474  T

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Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 30750717 - 30750803
Alignment:
Q  13 agacggataggaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaacacctttg 99  Q
    ||||||| ||||||||||||||||| || |||||||||||||| ||| ||||||| ||||||||| |||||||||||||||| ||||    
T  30750717 agacggaaaggaagtcagagtcccttgcttgggtgagaagaaactcagcaatcttttctttatcaacttctcgtccaaacacttttg 30750803  T

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Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 30401145 - 30401226
Alignment:
Q  13 agacggataggaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaacac 94  Q
    ||||||| ||||||||||||||||| || |||||||||||||| |||| |||||| ||||||||||||| ||||||||||||    
T  30401145 agacggaaaggaagtcagagtccctcgcatgggtgagaagaaactcaaaaatcttttctttatcatcttttcgtccaaacac 30401226  T

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Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 30207593 - 30207671
Alignment:
Q  13 agacggataggaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaa 91  Q
    ||||||| |||||||| |||||||| || |||||||||||||| || | |||||||||||||||||||||||| |||||    
T  30207593 agacggaaaggaagtcggagtccctcgcttgggtgagaagaaactcgataatcttctctttatcatcttctcgcccaaa 30207671  T

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Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 30676313 - 30676237
Alignment:
Q  23 gaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaacacctttg 99  Q
    ||||||||||||| | || |||||||||||||| || |||||||| |||| |||| |||||||||||||||| ||||    
T  30676313 gaagtcagagtccttcgcatgggtgagaagaaactcgacaatcttttcttgatcaacttctcgtccaaacacttttg 30676237  T

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Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 17417608 - 17417542
Alignment:
Q  33 tccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaacacctttg 99  Q
    ||||| || |||||||| ||||| ||||||||||||| | |||||||||| ||||||||||||||||    
T  17417608 tcccttgcttgggtgagcagaaactcaacaatcttctttgtatcatcttcccgtccaaacacctttg 17417542  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 30520652 - 30520588
Alignment:
Q  21 aggaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcg 85  Q
    |||| ||||||| || | || |||||||||||||| || ||||||||||||||||||||||||||    
T  30520652 aggaggtcagagccctttgcttgggtgagaagaaactcgacaatcttctctttatcatcttctcg 30520588  T

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Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 30560992 - 30560928
Alignment:
Q  21 aggaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcg 85  Q
    |||| ||||||| || | || |||||||||||||| || ||||||||||||||||||||||||||    
T  30560992 aggaggtcagagccctttgcttgggtgagaagaaactcgacaatcttctctttatcatcttctcg 30560928  T

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Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 30241408 - 30241330
Alignment:
Q  21 aggaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaacacctttg 99  Q
    |||||||| |||||| | || |||||||||||||| |  | |||||||| |||||| ||||||||||||||||| ||||    
T  30241408 aggaagtcggagtcctttgcttgggtgagaagaaactggataatcttctttttatcgtcttctcgtccaaacacttttg 30241330  T

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Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 17983969 - 17984026
Alignment:
Q  13 agacggataggaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctc 70  Q
    ||||||| ||||||||||||  ||| || |||||||||||||| ||||||||||||||    
T  17983969 agacggaaaggaagtcagagaacctcgcttgggtgagaagaaactcaacaatcttctc 17984026  T

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Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 30476475 - 30476527
Alignment:
Q  42 tgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaacac 94  Q
    |||||||||||||| || |||||| ||||| |||||||| |||||||||||||    
T  30476475 tgggtgagaagaaactcgacaatcctctctctatcatctactcgtccaaacac 30476527  T

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Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 30712453 - 30712398
Alignment:
Q  23 gaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcat 78  Q
    ||||||||||||| | || |||||||||||||| || |||||||| ||||||||||    
T  30712453 gaagtcagagtccttcgcatgggtgagaagaaactcgacaatcttttctttatcat 30712398  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 25292981 - 25292904
Alignment:
Q  14 gacggataggaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaa 91  Q
    |||||| ||||||||||||||||| || ||||| |||||||| || ||| ||||||||||||||||||||||||||||    
T  25292981 gacggaaaggaagtcagagtcccttgcttgggtaagaagaaactcgacagtcttctctttatcatcttctcgtccaaa 25292904  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 13617681 - 13617756
Alignment:
Q  24 aagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctcgtccaaacacctttg 99  Q
    ||||||||| ||||  | ||||||||| ||||   ||||||||||||||||| ||||| |||||||||||||||||    
T  13617681 aagtcagaggccctcacttgggtgagatgaaacctaacaatcttctctttattatcttatcgtccaaacacctttg 13617756  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 20295607 - 20295546
Alignment:
Q  23 gaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctc 84  Q
    ||||||||||||| | || |||||||||||||| || |||||||| | ||||||||| ||||    
T  20295607 gaagtcagagtccttcgcatgggtgagaagaaactcgacaatcttttttttatcatcgtctc 20295546  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 26708413 - 26708474
Alignment:
Q  23 gaagtcagagtccctggcctgggtgagaagaaagtcaacaatcttctctttatcatcttctc 84  Q
    ||||||||||||| | || |||||||||||||| || |||||||| ||||||||||| ||||    
T  26708413 gaagtcagagtccttcgcatgggtgagaagaaactcgacaatcttttctttatcatcgtctc 26708474  T

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