View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0745_low_4 (Length: 470)

Name: NF0745_low_4
Description: NF0745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0745_low_4
NF0745_low_4
[»] chr4 (13 HSPs)
chr4 (8-336)||(12320032-12320360)
chr4 (97-317)||(12311971-12312191)
chr4 (351-437)||(12320497-12320583)
chr4 (11-104)||(12311705-12311795)
chr4 (351-439)||(43515804-43515893)
chr4 (351-440)||(7853388-7853476)
chr4 (362-439)||(3643093-3643170)
chr4 (352-440)||(5627585-5627672)
chr4 (352-430)||(55147627-55147705)
chr4 (376-437)||(35372060-35372121)
chr4 (352-418)||(23870141-23870206)
chr4 (361-418)||(7745948-7746006)
chr4 (352-392)||(29118566-29118606)
[»] chr2 (12 HSPs)
chr2 (351-437)||(34909265-34909351)
chr2 (351-440)||(16547757-16547846)
chr2 (351-419)||(5163885-5163953)
chr2 (352-419)||(37912387-37912454)
chr2 (352-442)||(36186555-36186645)
chr2 (352-437)||(2886975-2887060)
chr2 (352-439)||(30257728-30257815)
chr2 (372-434)||(15925949-15926011)
chr2 (365-418)||(14952081-14952134)
chr2 (352-400)||(4206326-4206374)
chr2 (361-419)||(16646927-16646985)
chr2 (373-433)||(34346042-34346101)
[»] chr7 (10 HSPs)
chr7 (361-433)||(12177910-12177982)
chr7 (351-433)||(22318618-22318700)
chr7 (352-417)||(35812709-35812774)
chr7 (361-440)||(26914291-26914369)
chr7 (352-418)||(15133276-15133342)
chr7 (351-440)||(42335892-42335981)
chr7 (352-419)||(3351174-3351241)
chr7 (352-439)||(21828254-21828341)
chr7 (352-440)||(40351716-40351802)
chr7 (352-418)||(26448466-26448533)
[»] chr6 (13 HSPs)
chr6 (352-440)||(33344915-33345002)
chr6 (349-441)||(34969858-34969950)
chr6 (351-433)||(4337583-4337665)
chr6 (351-439)||(9815621-9815708)
chr6 (352-440)||(34329770-34329858)
chr6 (352-440)||(35121896-35121982)
chr6 (363-440)||(12174425-12174502)
chr6 (361-418)||(18991743-18991800)
chr6 (352-440)||(31787909-31787994)
chr6 (355-434)||(11274649-11274729)
chr6 (361-417)||(32331517-32331573)
chr6 (352-437)||(34573138-34573221)
chr6 (364-400)||(19638396-19638432)
[»] chr1 (12 HSPs)
chr1 (352-440)||(1240525-1240613)
chr1 (352-419)||(22667163-22667230)
chr1 (352-419)||(35405430-35405497)
chr1 (352-442)||(29062311-29062401)
chr1 (352-439)||(15102999-15103082)
chr1 (352-429)||(23897857-23897937)
chr1 (352-440)||(49762398-49762485)
chr1 (352-438)||(35383763-35383848)
chr1 (392-437)||(33735695-33735740)
chr1 (355-434)||(35204171-35204251)
chr1 (376-439)||(8246665-8246726)
chr1 (354-418)||(36382974-36383038)
[»] chr3 (8 HSPs)
chr3 (352-419)||(11365141-11365208)
chr3 (355-429)||(47000824-47000898)
chr3 (354-439)||(52704599-52704684)
chr3 (355-418)||(42417975-42418038)
chr3 (352-389)||(11383687-11383724)
chr3 (352-440)||(33290792-33290880)
chr3 (352-418)||(27538755-27538820)
chr3 (356-440)||(19149802-19149887)
[»] chr8 (7 HSPs)
chr8 (352-438)||(13236276-13236362)
chr8 (352-440)||(13580306-13580393)
chr8 (352-430)||(43872601-43872679)
chr8 (360-440)||(4350612-4350691)
chr8 (361-399)||(24606874-24606912)
chr8 (355-434)||(12181916-12181997)
chr8 (355-434)||(12426344-12426425)
[»] chr5 (8 HSPs)
chr5 (362-440)||(25034300-25034378)
chr5 (351-440)||(10325547-10325639)
chr5 (352-433)||(32257639-32257720)
chr5 (352-439)||(7886562-7886647)
chr5 (352-440)||(20870724-20870810)
chr5 (352-439)||(18626752-18626835)
chr5 (397-440)||(20017605-20017648)
chr5 (355-420)||(3596879-3596944)
[»] scaffold1173 (1 HSPs)
scaffold1173 (352-429)||(422-499)
[»] scaffold0527 (2 HSPs)
scaffold0527 (352-437)||(1739-1824)
scaffold0527 (352-437)||(9802-9887)
[»] scaffold0531 (1 HSPs)
scaffold0531 (351-433)||(9794-9878)
[»] scaffold0007 (1 HSPs)
scaffold0007 (397-441)||(4447-4491)


Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 8 - 336
Target Start/End: Original strand, 12320032 - 12320360
Alignment:
Q  8 cgaagaatatgagatcgtgattgttggaggtggtatatgtggccttgcaacagccctagcacttcataggttttattattatgcaagccaaatttattta 107  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12320032 cgaagaaaatgagatcgtgattgttggaggtggtatatgtggccttgcaacagccctagcacttcataggttttattattatgcaagccaaatttattta 12320131  T
Q  108 tatataaaactttgatatgatcttataagataagattacattttcactaactttgcaggaagagaataaagagtttggtgttagaaagatcagaggagtt 207  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12320132 tatataaaactttgatatgatattataagataagattacattttcactaactttgcaggaagagaataaagagtttggtgttagaaagatcagaggagtt 12320231  T
Q  208 gagagctacaggtgcagctataattgttcaagctaatggatggcatgcacttgatcagcttggtgttggttcaatacttagagaaactgctattcaaata 307  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12320232 gagagctacaggtgcagctataattgtgcaagctaatggatggcatgcacttgatcagcttggtgttggttcaatacttagagaaactgctattcaaata 12320331  T
Q  308 caagggtaatcatgattaatcatattgag 336  Q
    |||||||||||||||||||| ||||||||    
T  12320332 caagggtaatcatgattaattatattgag 12320360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 97 - 317
Target Start/End: Original strand, 12311971 - 12312191
Alignment:
Q  97 aaatttatttatatataaaactttgatatgatcttataagataagattacattttcactaactttgcaggaagagaataaagagtttggtgttagaaaga 196  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||| |    
T  12311971 aaatttatttatatataaaactttgatatgatcttatgagataagattatattttcattaactttgcaggaagagtataaagagtttggtgttagaaaaa 12312070  T
Q  197 tcagaggagttgagagctacaggtgcagctataattgttcaagctaatggatggcatgcacttgatcagcttggtgttggttcaatacttagagaaactg 296  Q
    |||||||| ||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12312071 tcagaggaattgcgagccacaggggcagctataattgttcaagctaatggatggcatgcacttgatcagcttggtgttggttcaatacttagagaaactg 12312170  T
Q  297 ctattcaaatacaagggtaat 317  Q
    ||||||||||||| |||||||    
T  12312171 ctattcaaatacatgggtaat 12312191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 351 - 437
Target Start/End: Original strand, 12320497 - 12320583
Alignment:
Q  351 aaactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgttt 437  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12320497 aaacttcgattataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgttt 12320583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 12311705 - 12311795
Alignment:
Q  11 agaatatgagatcgtgattgttggaggtggtatatgtggccttgcaacagccctagcacttcataggttttattattatgcaagccaaatttat 104  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||   ||||||| |||||||||    
T  12311705 agaaaatgagatcgtgattgttggaggtggtatatgtggccttgcaacagccctagcgcttcataggttctatt---atgcaagtcaaatttat 12311795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 351 - 439
Target Start/End: Complemental strand, 43515893 - 43515804
Alignment:
Q  351 aaactttgaatataaatgaatattttgcaacaaaaaa-tgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcg 439  Q
    ||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||| |||||| |||||| |||||||||||||||||||    
T  43515893 aaactttgattataaatgaatcttttgcaacaaaaaaatgtaagaagaaaactattagaataactaaaagggcacaattttattgtttcg 43515804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 351 - 440
Target Start/End: Original strand, 7853388 - 7853476
Alignment:
Q  351 aaactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgt 440  Q
    ||||||||| |||||||||||  ||||||| |||| |||||||||||||||||||| |||||||||||| | ||||||||||||||||||    
T  7853388 aaactttgattataaatgaattctttgcaataaaa-atgtaagaagaaaactattgaaataattaaaagggtacaattttattgtttcgt 7853476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 362 - 439
Target Start/End: Complemental strand, 3643170 - 3643093
Alignment:
Q  362 ataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcg 439  Q
    |||||||||| || |||||||||||||  |||||||||| |||||||||||||||||   ||||||||||||||||||    
T  3643170 ataaatgaattttgtgcaacaaaaaatccaagaagaaaaatattggaataattaaaatgacacaattttattgtttcg 3643093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 352 - 440
Target Start/End: Original strand, 5627585 - 5627672
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgt 440  Q
    |||| ||| ||||||||||||||||||||||||||||| || ||||||| |||| ||||||||||||| |||  | |||||||||||||    
T  5627585 aactctgattataaatgaatattttgcaacaaaaaatgcaataagaaaaatatttgaataattaaaagggcatga-tttattgtttcgt 5627672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 352 - 430
Target Start/End: Complemental strand, 55147705 - 55147627
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaatttt 430  Q
    |||||||| ||||||||||| || | |||||||||||  || | ||||| |||| ||||||||||||||||||||||||    
T  55147705 aactttgattataaatgaatcttgtacaacaaaaaatagaatatgaaaaatattagaataattaaaagagcacaatttt 55147627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 437
Target Start/End: Complemental strand, 35372121 - 35372060
Alignment:
Q  376 tgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgttt 437  Q
    ||||||||||||||||||||||||| |||| ||||| ||||||  |||||| ||||||||||    
T  35372121 tgcaacaaaaaatgtaagaagaaaaatattagaatatttaaaatggcacaactttattgttt 35372060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 418
Target Start/End: Original strand, 23870141 - 23870206
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaa 418  Q
    |||||||| ||||||||||||||||||||||||||| | ||||| ||||  |||| |||||||||||    
T  23870141 aactttgattataaatgaatattttgcaacaaaaaaagcaagaa-aaaaaaattgtaataattaaaa 23870206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 418
Target Start/End: Complemental strand, 7746006 - 7745948
Alignment:
Q  361 tataaatgaat-attttgcaacaaaaaatgtaagaagaaaactattggaataattaaaa 418  Q
    ||||||||||| ||||| |||||||||||| |||||||||  |||| ||||||||||||    
T  7746006 tataaatgaattattttccaacaaaaaatgcaagaagaaagatatttgaataattaaaa 7745948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 352 - 392
Target Start/End: Original strand, 29118566 - 29118606
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaa 392  Q
    |||||||| ||| |||||||||||||||| |||||||||||    
T  29118566 aactttgattatgaatgaatattttgcaataaaaaatgtaa 29118606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 351 - 437
Target Start/End: Complemental strand, 34909351 - 34909265
Alignment:
Q  351 aaactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgttt 437  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||  || |||||||||||||    
T  34909351 aaactttgactataaatgaatattttgcaacaaaaaatgtaagaagaaaattattgaaataattaaaaggacaaaattttattgttt 34909265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 351 - 440
Target Start/End: Original strand, 16547757 - 16547846
Alignment:
Q  351 aaactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgt 440  Q
    ||||||||| |||||||| || |||| ||||||||||||||||||||||||||||| ||  ||||||||  |||||||||||||||||||    
T  16547757 aaactttgattataaatggatcttttacaacaaaaaatgtaagaagaaaactattgaaactattaaaaggacacaattttattgtttcgt 16547846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 351 - 419
Target Start/End: Original strand, 5163885 - 5163953
Alignment:
Q  351 aaactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaag 419  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||| |||||| |||||    
T  5163885 aaactttgattataaatgaatcttttgtaacaaaaaatgtaagaagaaaactattgaaataataaaaag 5163953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 352 - 419
Target Start/End: Original strand, 37912387 - 37912454
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaag 419  Q
    |||||||| |||||||||||||||||||||||| |||||||| |||||| |||| |||||||||||||    
T  37912387 aactttgattataaatgaatattttgcaacaaacaatgtaaggagaaaaatatttgaataattaaaag 37912454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 352 - 442
Target Start/End: Complemental strand, 36186645 - 36186555
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttt 442  Q
    |||||||| ||||||| ||| ||||||||||||||||||| ||||||||  ||| |||||||||||||  || |||||||  |||||||||    
T  36186645 aactttgattataaataaatcttttgcaacaaaaaatgtatgaagaaaaacattagaataattaaaaggacaaaattttaccgtttcgttt 36186555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 352 - 437
Target Start/End: Complemental strand, 2887060 - 2886975
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgttt 437  Q
    |||||||| ||||||| |||  | | |||||||||||| |||||||||| |||| ||||||||||||  | |||||||||||||||    
T  2887060 aactttgattataaataaatcatctacaacaaaaaatgcaagaagaaaagtattagaataattaaaaaggtacaattttattgttt 2886975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 352 - 439
Target Start/End: Complemental strand, 30257815 - 30257728
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcg 439  Q
    |||||||| ||||||| ||| ||||| ||||||||||| ||||  |||| ||||  |||| ||||||| ||||||| |||||||||||    
T  30257815 aactttgattataaataaatcttttgaaacaaaaaatgcaagataaaaaatattaaaatatttaaaagggcacaatcttattgtttcg 30257728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 434
Target Start/End: Original strand, 15925949 - 15926011
Alignment:
Q  372 attttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattg 434  Q
    ||||||||||||||||||||||||||||| ||||  |||||||| ||  | ||||||||||||    
T  15925949 attttgcaacaaaaaatgtaagaagaaaaatatttaaataattataaaggtacaattttattg 15926011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 418
Target Start/End: Original strand, 14952081 - 14952134
Alignment:
Q  365 aatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaa 418  Q
    |||||||||||||||||||||| ||||| ||||||  |||| ||||||||||||    
T  14952081 aatgaatattttgcaacaaaaattgtaaaaagaaagatattcgaataattaaaa 14952134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 4206374 - 4206326
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaa 400  Q
    |||||| | ||||||||||||||||||||||||||||| ||||| ||||    
T  4206374 aactttaattataaatgaatattttgcaacaaaaaatgcaagaaaaaaa 4206326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 419
Target Start/End: Complemental strand, 16646985 - 16646927
Alignment:
Q  361 tataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaag 419  Q
    ||||||||||| || |||||||||||||  |||||||||| ||||  ||||||||||||    
T  16646985 tataaatgaatcttgtgcaacaaaaaataaaagaagaaaaatattaaaataattaaaag 16646927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 433
Target Start/End: Original strand, 34346042 - 34346101
Alignment:
Q  373 ttttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttatt 433  Q
    ||||||||||||||||  |||||||||| |||| ||||| |||||| | ||||||||||||    
T  34346042 ttttgcaacaaaaaatacaagaagaaaaatattagaatatttaaaa-atcacaattttatt 34346101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 361 - 433
Target Start/End: Original strand, 12177910 - 12177982
Alignment:
Q  361 tataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttatt 433  Q
    |||| |||||| ||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||    
T  12177910 tatagatgaatcttttgcaacaaaaaatgtaagaagaaaactattagaataattaatagggcacaattttatt 12177982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 351 - 433
Target Start/End: Complemental strand, 22318700 - 22318618
Alignment:
Q  351 aaactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttatt 433  Q
    ||||||| | ||||||| ||| ||||||||||||||||||||||| |||||||||| ||||| |||||| |||||||||||||    
T  22318700 aaactttaattataaataaatcttttgcaacaaaaaatgtaagaaaaaaactattgaaataactaaaagggcacaattttatt 22318618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 352 - 417
Target Start/End: Original strand, 35812709 - 35812774
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaa 417  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||    
T  35812709 aactttgattataaatgaatattttgcaacaaaaaatgcaagaagaataatattggaataattaaa 35812774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 361 - 440
Target Start/End: Complemental strand, 26914369 - 26914291
Alignment:
Q  361 tataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgt 440  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||  ||||||||||||  ||| |||||||||||||||    
T  26914369 tataaatgaatattttgcaacaaaaaatgcaagaagaaaaatattaaaataattaaaaggacac-attttattgtttcgt 26914291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 352 - 418
Target Start/End: Complemental strand, 15133342 - 15133276
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaa 418  Q
    |||||||| |||||||||||||||| |||||||||||||||||| |||| |||| ||||||||||||    
T  15133342 aactttgattataaatgaatattttacaacaaaaaatgtaagaaaaaaaatatttgaataattaaaa 15133276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 351 - 440
Target Start/End: Complemental strand, 42335981 - 42335892
Alignment:
Q  351 aaactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgt 440  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||  ||| |||||||   || ||||||||| ||||||    
T  42335981 aaactttgattataaatgaatcttttgcaacaaaaaatgtaagaaaaaaactattaaaatgattaaaaagacataattttattatttcgt 42335892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 352 - 419
Target Start/End: Original strand, 3351174 - 3351241
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaag 419  Q
    |||||||| |||||||||||||||| |||||||||||| |||||||||| ||||  ||||||||||||    
T  3351174 aactttgattataaatgaatattttacaacaaaaaatgcaagaagaaaaatattttaataattaaaag 3351241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 439
Target Start/End: Original strand, 21828254 - 21828341
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcg 439  Q
    |||||||| ||||||||||| || |||||||||||||  |||| ||||| |||| ||||||||||||| | |||||||| || |||||    
T  21828254 aactttgattataaatgaatcttgtgcaacaaaaaataaaagacgaaaaatattagaataattaaaagggtacaatttttttctttcg 21828341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 440
Target Start/End: Complemental strand, 40351802 - 40351716
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgt 440  Q
    |||||||| ||||||| ||| |||  |||||||||||| ||||| ||||  ||| ||||||||||||| | | ||||||||||||||||    
T  40351802 aactttgattataaataaatctttatcaacaaaaaatgcaagaaaaaaa--attagaataattaaaagggaagaattttattgtttcgt 40351716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 418
Target Start/End: Original strand, 26448466 - 26448533
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaacta-ttggaataattaaaa 418  Q
    ||||||||  |||||||||| ||||||||||||||||| ||||| |||| || ||| |||||||||||    
T  26448466 aactttgataataaatgaatcttttgcaacaaaaaatgcaagaaaaaaaatatttgaaataattaaaa 26448533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 352 - 440
Target Start/End: Original strand, 33344915 - 33345002
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgt 440  Q
    |||||||| |||||||||||||||||||||||||||||  ||||||||| |||| ||||||||||||| ||| || |||||||||||||    
T  33344915 aactttgattataaatgaatattttgcaacaaaaaatgctagaagaaaaatatttgaataattaaaagggcataa-tttattgtttcgt 33345002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 349 - 441
Target Start/End: Original strand, 34969858 - 34969950
Alignment:
Q  349 agaaactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgtt 441  Q
    ||||||||||| ||||||||||| |||| |||||||||||| |||||||||| |||||||||| | ||||| |||| ||||| ||||||||||    
T  34969858 agaaactttgactataaatgaatcttttacaacaaaaaatgcaagaagaaaaatattggaatagtgaaaagggcactattttgttgtttcgtt 34969950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 351 - 433
Target Start/End: Complemental strand, 4337665 - 4337583
Alignment:
Q  351 aaactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttatt 433  Q
    ||||||||| ||||||| ||| |||| |||||||||||||||||||||| ||||| ||||||||||||  |||||||||||||    
T  4337665 aaactttgattataaataaatcttttacaacaaaaaatgtaagaagaaagctattagaataattaaaatggcacaattttatt 4337583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 439
Target Start/End: Complemental strand, 9815708 - 9815621
Alignment:
Q  351 aaactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcg 439  Q
    ||||| ||| ||||||||| | ||||| ||||||||||| |||||||| | |||| ||||||||||||| |||||||||||||||||||    
T  9815708 aaactatgattataaatgagt-ttttgtaacaaaaaatgcaagaagaataatattagaataattaaaagggcacaattttattgtttcg 9815621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 352 - 440
Target Start/End: Complemental strand, 34329858 - 34329770
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgt 440  Q
    |||||||  |||||||  || ||||||||||||||||| |||||||||| |||| ||||||||||||| |||  |||||||||||||||    
T  34329858 aactttgcttataaatagatcttttgcaacaaaaaatgcaagaagaaaaatattagaataattaaaagggcatgattttattgtttcgt 34329770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 352 - 440
Target Start/End: Complemental strand, 35121982 - 35121896
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgt 440  Q
    |||||||| |||||||||||||||||||||| ||||||  ||||||||| |||| ||||||||||||| ||| || |||||||||||||    
T  35121982 aactttgattataaatgaatattttgcaaca-aaaatgctagaagaaaaatatttgaataattaaaagggcataa-tttattgtttcgt 35121896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 440
Target Start/End: Original strand, 12174425 - 12174502
Alignment:
Q  363 taaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgt 440  Q
    ||||||||| ||||| |||||||| || |||||| ||| ||||| ||||| ||||| | |||||||||||||||||||    
T  12174425 taaatgaatcttttgtaacaaaaactgcaagaaggaaaatattgaaataaataaaacaacacaattttattgtttcgt 12174502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 418
Target Start/End: Complemental strand, 18991800 - 18991743
Alignment:
Q  361 tataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaa 418  Q
    ||||||||||| || |||||||||||||| |||||||||| ||||| |||| ||||||    
T  18991800 tataaatgaatcttgtgcaacaaaaaatgcaagaagaaaaatattgaaatagttaaaa 18991743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 440
Target Start/End: Original strand, 31787909 - 31787994
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgt 440  Q
    |||||| | ||||||||||||||||||||| ||||||| ||||  |||| ||||| |||||||||||  | |||| |||||||||||||    
T  31787909 aactttaattataaatgaatattttgcaactaaaaatgcaaga--aaaaatattgaaataattaaaaaggtacaa-tttattgtttcgt 31787994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 434
Target Start/End: Original strand, 11274649 - 11274729
Alignment:
Q  355 tttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataatt-aaaagagcacaattttattg 434  Q
    ||||| ||| |||||||||||||||||||||| |  ||||| ||||  ||||||||| || |||||| |||||||||||||    
T  11274649 tttgattatgaatgaatattttgcaacaaaaagtacaagaaaaaaaacattggaatagttaaaaagaacacaattttattg 11274729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 417
Target Start/End: Complemental strand, 32331573 - 32331517
Alignment:
Q  361 tataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaa 417  Q
    ||||||| ||| |||||||||||||||| ||||||||||| |||| || ||||||||    
T  32331573 tataaataaatcttttgcaacaaaaaatataagaagaaaagtatttgactaattaaa 32331517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 437
Target Start/End: Complemental strand, 34573221 - 34573138
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgttt 437  Q
    |||||||| ||||||||||| ||||  || ||| |||| || ||||||| |||| ||||| || |||| |||||||||||||||||    
T  34573221 aactttgattataaatgaatctttt--aaaaaagaatgcaaaaagaaaaatatttgaatattttaaagggcacaattttattgttt 34573138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 400
Target Start/End: Complemental strand, 19638432 - 19638396
Alignment:
Q  364 aaatgaatattttgcaacaaaaaatgtaagaagaaaa 400  Q
    |||||||| |||| |||||||||||||||||||||||    
T  19638432 aaatgaatcttttacaacaaaaaatgtaagaagaaaa 19638396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 352 - 440
Target Start/End: Original strand, 1240525 - 1240613
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgt 440  Q
    ||||| || ||||||||||| ||||||||||||||||| |||||||||| |||  | ||||||||||| ||||||||||||||||||||    
T  1240525 aacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatatcaggataattaaaagggcacaattttattgtttcgt 1240613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 352 - 419
Target Start/End: Complemental strand, 22667230 - 22667163
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaag 419  Q
    |||||||| |||||||||||||||||||| |||||||| |||||||||| |||| |||||||||||||    
T  22667230 aactttgattataaatgaatattttgcaataaaaaatgcaagaagaaaaatatttgaataattaaaag 22667163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 352 - 419
Target Start/End: Original strand, 35405430 - 35405497
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaag 419  Q
    |||||||| || |||||||||||||||||||||||||| |||||||||| |||| |||||||||||||    
T  35405430 aactttgattagaaatgaatattttgcaacaaaaaatgcaagaagaaaaatatttgaataattaaaag 35405497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 352 - 442
Target Start/End: Complemental strand, 29062401 - 29062311
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgttt 442  Q
    |||||| | ||||||| ||| ||||||||||||||||  |||||||||  ||||||| ||||||||||||||  |||||||||||||||||    
T  29062401 aacttttattataaataaatcttttgcaacaaaaaatacaagaagaaatatattggagtaattaaaagagcattattttattgtttcgttt 29062311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 439
Target Start/End: Complemental strand, 15103082 - 15102999
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcg 439  Q
    |||||||| ||||||||||| || |||||||||||||   | ||||||| ||||| ||||||||||||| ||||||||||||||||||    
T  15103082 aactttgattataaatgaatcttgtgcaacaaaaaat---acaagaaaa-tattgaaataattaaaagaacacaattttattgtttcg 15102999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 429
Target Start/End: Complemental strand, 23897937 - 23897857
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaa--aaaatgtaagaagaaaactattggaat-aattaaaagagcacaattt 429  Q
    |||||||| |||||||||||||||||||||||  |||||| |||||||||| |||| |||| ||||||||| |||||||||    
T  23897937 aactttgattataaatgaatattttgcaacaaaaaaaatgcaagaagaaaaatatttgaataaattaaaagggcacaattt 23897857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 352 - 440
Target Start/End: Complemental strand, 49762485 - 49762398
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgt 440  Q
    |||||||| ||||||||| | || || |||||||||| ||||||||||| |||| ||||||||||||   |||||||||||||||||||    
T  49762485 aactttgattataaatgagttttgtgtaacaaaaaatataagaagaaaa-tattagaataattaaaaagacacaattttattgtttcgt 49762398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 438
Target Start/End: Complemental strand, 35383848 - 35383763
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttc 438  Q
    |||||||| ||||||||||  |||||||||||||| |||||| |||||  |||| ||||||||||||   |||||||| ||||||||    
T  35383848 aactttgattataaatgaaacttttgcaacaaaaa-tgtaagtagaaatatattagaataattaaaatgacacaatttgattgtttc 35383763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 392 - 437
Target Start/End: Complemental strand, 33735740 - 33735695
Alignment:
Q  392 agaagaaaactattggaataattaaaagagcacaattttattgttt 437  Q
    ||||||||||||||  |||||||||||| |||||||||||||||||    
T  33735740 agaagaaaactattaaaataattaaaagggcacaattttattgttt 33735695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 434
Target Start/End: Complemental strand, 35204251 - 35204171
Alignment:
Q  355 tttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataatt-aaaagagcacaattttattg 434  Q
    ||||| ||| |||||||||||||||| ||||| |  ||||| ||||  |||||||||||| |||||| |||||||||||||    
T  35204251 tttgattatgaatgaatattttgcaataaaaagtacaagaaaaaaaacattggaataattaaaaagaacacaattttattg 35204171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 439
Target Start/End: Complemental strand, 8246726 - 8246665
Alignment:
Q  376 tgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcg 439  Q
    ||||||||||||| |||||| |||  ||||||| |||||| |||| |||||||||||| |||||    
T  8246726 tgcaacaaaaaatataagaaaaaa--tattggagtaattagaagaacacaattttattatttcg 8246665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 418
Target Start/End: Original strand, 36382974 - 36383038
Alignment:
Q  354 ctttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaa 418  Q
    |||||| ||| |||||||||||  |||||||||||||| ||||||||  |||  |||||||||||    
T  36382974 ctttgattatgaatgaatatttcacaacaaaaaatgtatgaagaaaaacattcaaataattaaaa 36383038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 352 - 419
Target Start/End: Original strand, 11365141 - 11365208
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaag 419  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||    
T  11365141 aactttgattataaatgaatattttgcaacaaaaaatgcaagaagaaaaatatttgaataattaaaag 11365208  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 355 - 429
Target Start/End: Complemental strand, 47000898 - 47000824
Alignment:
Q  355 tttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattt 429  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||| ||||  ||| |||||||| |||||||||    
T  47000898 tttgattataaatgaatattttgcaacaaaaaatataagaagaaaaatatttaaatgattaaaagggcacaattt 47000824  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 439
Target Start/End: Complemental strand, 52704684 - 52704599
Alignment:
Q  354 ctttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcg 439  Q
    |||||| ||||||||||| || |||||||||||||  || | ||||| |||| ||||||||||||| |||||||||| || |||||    
T  52704684 ctttgattataaatgaatcttgtgcaacaaaaaatacaaaatgaaaaatattagaataattaaaagggcacaatttttttctttcg 52704599  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 418
Target Start/End: Original strand, 42417975 - 42418038
Alignment:
Q  355 tttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaa 418  Q
    ||||| ||||||| ||||||||| |||||||||||||| || |||| ||||||||| |||||||    
T  42417975 tttgattataaataaatattttgtaacaaaaaatgtaataacaaaaatattggaatgattaaaa 42418038  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 389
Target Start/End: Original strand, 11383687 - 11383724
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatg 389  Q
    |||||||| |||||||||||||||||||||||||||||    
T  11383687 aactttgattataaatgaatattttgcaacaaaaaatg 11383724  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 440
Target Start/End: Original strand, 33290792 - 33290880
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgt 440  Q
    ||||||||  |||||||||| || |||||||||||| | ||| |||||| ||||| |||||||||||   || || |||||||||||||    
T  33290792 aactttgatcataaatgaatcttgtgcaacaaaaaacgcaaggagaaaaatattgaaataattaaaaagacataactttattgtttcgt 33290880  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 418
Target Start/End: Complemental strand, 27538820 - 27538755
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaa 418  Q
    |||||||| || |||||||||||||||||||||||||  ||||| |||| ||||| |||| ||||||    
T  27538820 aactttgattagaaatgaatattttgcaacaaaaaatacaagaa-aaaaatattgaaatagttaaaa 27538755  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 440
Target Start/End: Complemental strand, 19149887 - 19149802
Alignment:
Q  356 ttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaac-tattggaataattaaaagagcacaattttattgtttcgt 440  Q
    |||| ||||||| ||| |||| ||| |||||||| ||||| ||||  |||||||||||||||||| ||  |||||| |||||||||    
T  19149887 ttgattataaataaatcttttacaataaaaaatgcaagaaaaaaaaatattggaataattaaaagggcgtaattttgttgtttcgt 19149802  T

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Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 352 - 438
Target Start/End: Original strand, 13236276 - 13236362
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttc 438  Q
    |||||||| |||||| |||| |||||||||||| |||| |||||||||| |||||||||||||||||  ||| ||||||||||||||    
T  13236276 aactttgattataaacgaattttttgcaacaaataatgcaagaagaaaaatattggaataattaaaatggcataattttattgtttc 13236362  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 352 - 440
Target Start/End: Complemental strand, 13580393 - 13580306
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgt 440  Q
    |||||||  ||||||||||||||||||||||||||||| ||||  |||| |||| |||||||||||||| || || |||||||||||||    
T  13580393 aactttggttataaatgaatattttgcaacaaaaaatgcaagacaaaaaatattagaataattaaaagaacataa-tttattgtttcgt 13580306  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 352 - 430
Target Start/End: Original strand, 43872601 - 43872679
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaatttt 430  Q
    |||||||| ||||||||||| || |||||||||||||  || ||||||| |||| ||||||||||||| | ||||||||    
T  43872601 aactttgattataaatgaatcttgtgcaacaaaaaatacaaaaagaaaaatattagaataattaaaagggtacaatttt 43872679  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 440
Target Start/End: Complemental strand, 4350691 - 4350612
Alignment:
Q  360 atataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgt 440  Q
    ||||||| ||||||||| |||||||||||| ||||| |||| ||||  |||||||||||| | |||| |||||||||||||    
T  4350691 atataaacgaatatttttcaacaaaaaatgcaagaaaaaaaatattaaaataattaaaagggtacaa-tttattgtttcgt 4350612  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 399
Target Start/End: Original strand, 24606874 - 24606912
Alignment:
Q  361 tataaatgaatattttgcaacaaaaaatgtaagaagaaa 399  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  24606874 tataaatgaatcttttgcagcaaaaaatgtaagaagaaa 24606912  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 434
Target Start/End: Original strand, 12181916 - 12181997
Alignment:
Q  355 tttgaatataaatgaatattttgcaacaaaaaatgtaag-aagaaaactattggaataatta-aaagagcacaattttattg 434  Q
    ||||| ||| |||||||||||||||||||||| |  ||| || ||||  ||||||||||||| ||||| |||||||||||||    
T  12181916 tttgattatgaatgaatattttgcaacaaaaagtacaagaaaaaaaaacattggaataattataaagaacacaattttattg 12181997  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 434
Target Start/End: Original strand, 12426344 - 12426425
Alignment:
Q  355 tttgaatataaatgaatattttgcaacaaaaaatgtaag-aagaaaactattggaataatta-aaagagcacaattttattg 434  Q
    ||||| ||| |||||||||||||||||||||| |  ||| || ||||  ||||||||||||| ||||| |||||||||||||    
T  12426344 tttgattatgaatgaatattttgcaacaaaaagtacaagaaaaaaaaacattggaataattataaagaacacaattttattg 12426425  T

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Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 362 - 440
Target Start/End: Complemental strand, 25034378 - 25034300
Alignment:
Q  362 ataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgt 440  Q
    |||||||||| |||||||||||||||||||||||||||||||||| | |||||||||   || ||||||||||||||||    
T  25034378 ataaatgaattttttgcaacaaaaaatgtaagaagaaaactattgaagtaattaaaatgacataattttattgtttcgt 25034300  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 440
Target Start/End: Complemental strand, 10325639 - 10325547
Alignment:
Q  351 aaactttgaatataaatgaatattttgcaacaaaaaat---gtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgt 440  Q
    |||||||||  |||||||||| |||||||||||||||    ||| ||  |||||||| |||||||||||||| ||||||||||||||||||||    
T  10325639 aaactttgatcataaatgaatcttttgcaacaaaaaaaaaagtaggattaaaactatcggaataattaaaagggcacaattttattgtttcgt 10325547  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 433
Target Start/End: Complemental strand, 32257720 - 32257639
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttatt 433  Q
    |||||||| ||||||||||| || || ||||||||||| ||||| ||||  ||||||||||||||||| ||||| |||||||    
T  32257720 aactttgattataaatgaattttgtgtaacaaaaaatgcaagaacaaaaaaattggaataattaaaagggcacagttttatt 32257639  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 439
Target Start/End: Complemental strand, 7886647 - 7886562
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcg 439  Q
    |||||||| ||||| ||||||||||| ||||||||| |||||||||||| | || ||||||||||||  |||||| ||||||||||||    
T  7886647 aactttgattataagtgaatattttggaacaaaaaa-gtaagaagaaaaatgtttgaataattaaaatggcacaa-tttattgtttcg 7886562  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 440
Target Start/End: Original strand, 20870724 - 20870810
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcgt 440  Q
    |||||||| |||||||||||||| |||||||||||||| ||||| |||| ||||  |||||||||||  | |||| |||||||||||||    
T  20870724 aactttgattataaatgaatattctgcaacaaaaaatgcaagaa-aaaaatattaaaataattaaaatggtacaa-tttattgtttcgt 20870810  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 439
Target Start/End: Original strand, 18626752 - 18626835
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgtttcg 439  Q
    |||||||| ||||||||||| || |||||||||||||   | ||||||| ||||  ||||||||||||  ||||||||||||||||||    
T  18626752 aactttgattataaatgaatcttgtgcaacaaaaaat---acaagaaaa-tattaaaataattaaaaggacacaattttattgtttcg 18626835  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 20017605 - 20017648
Alignment:
Q  397 aaaactattggaataattaaaagagcacaattttattgtttcgt 440  Q
    |||| |||| ||||||||||||| ||||||||||||||||||||    
T  20017605 aaaaatattagaataattaaaagggcacaattttattgtttcgt 20017648  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 420
Target Start/End: Complemental strand, 3596944 - 3596879
Alignment:
Q  355 tttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaaga 420  Q
    ||||||||||| ||||| ||||| || ||||||| ||| || |||| |||| ||||||||||||||    
T  3596944 tttgaatataagtgaatcttttgaaaaaaaaaatataaaaataaaagtattagaataattaaaaga 3596879  T

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Target: scaffold1173 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold1173
Description:

Target: scaffold1173; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 429
Target Start/End: Original strand, 422 - 499
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattt 429  Q
    |||||||| ||||||| |||||||| ||| |||||||| |||||||||| |||| ||||||||||| | |||||||||    
T  422 aactttgattataaattaatattttacaataaaaaatgcaagaagaaaaatatttgaataattaaaggggcacaattt 499  T

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Target: scaffold0527 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 437
Target Start/End: Original strand, 1739 - 1824
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgttt 437  Q
    |||||||| ||||||| ||| |||||||| |||||||| |||||||||| ||||| |||||||||||   |||||||| |||||||    
T  1739 aactttgattataaataaatcttttgcaataaaaaatgaaagaagaaaaatattgaaataattaaaaagacacaatttaattgttt 1824  T

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Target: scaffold0527; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 437
Target Start/End: Original strand, 9802 - 9887
Alignment:
Q  352 aactttgaatataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttattgttt 437  Q
    |||||||| ||||||| ||| |||||||| |||||||| |||||||||| ||||| |||||||||||   |||||||| |||||||    
T  9802 aactttgattataaataaatcttttgcaataaaaaatgaaagaagaaaaatattgaaataattaaaaagacacaatttaattgttt 9887  T

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Target: scaffold0531 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 433
Target Start/End: Original strand, 9794 - 9878
Alignment:
Q  351 aaactttgaatataaatgaatattttgcaacaaaaaatgtaagaag-aaaact-attggaataatt-aaaagagcacaattttatt 433  Q
    ||||||||| ||||||||||  |||| ||||||||||| ||| ||| |||||| |||||||||||| ||||| |||||||||||||    
T  9794 aaactttgattataaatgaag-ttttacaacaaaaaatataaaaagaaaaactaattggaataattaaaaagggcacaattttatt 9878  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 441
Target Start/End: Original strand, 4447 - 4491
Alignment:
Q  397 aaaactattggaataattaaaagagcacaattttattgtttcgtt 441  Q
    |||| ||||| ||||||||||||  ||||||||||||||||||||    
T  4447 aaaaatattgaaataattaaaaggacacaattttattgtttcgtt 4491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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