View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0745_low_43 (Length: 209)
Name: NF0745_low_43
Description: NF0745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0745_low_43 |
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| [»] scaffold2006 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 5187214 - 5187308
Alignment:
| Q |
1 |
aataacaataacataaaactccatgacttcaaaataaaaataaatgagtttctctttgaattttcataatagtaaattagaattgttttacttca |
95 |
Q |
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| T |
5187214 |
aataacaataagataaaactccatgacttcaaaataaaaataaatgagtttctctttgaattttcaaaatagtaaattagaatcgttttacttca |
5187308 |
T |
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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 21266987 - 21267063
Alignment:
| Q |
1 |
aataacaataacataaaactccatgacttcaaaataaaaataaatgagtttctctttgaattttcataatagtaaat |
77 |
Q |
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| T |
21266987 |
aataacaataacttaaaactccttggcttcaaaataaaaataaataaatttctcttaaaattttcaaaacagtaaat |
21267063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 48185703 - 48185782
Alignment:
| Q |
1 |
aataacaataacataaaactccatgacttcaaaataaaaataaatgagtttctctttgaattttcataatagtaaattaga |
81 |
Q |
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| T |
48185703 |
aataacaataacttaaaactccttggcttcaagataaaaataaataaatttctc-ttaaattttcaaaacagtaaattaga |
48185782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 25218382 - 25218331
Alignment:
| Q |
40 |
ataaatgagtttctctttgaattttcataatagtaaattagaattgttttac |
91 |
Q |
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| T |
25218382 |
ataaataagtttctctttgaattttcaaaatagtaaattagagttgtcttac |
25218331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 41313037 - 41313088
Alignment:
| Q |
39 |
aataaatgagtttctctttgaattttcataatagtaaattagaattgttttac |
91 |
Q |
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| T |
41313037 |
aataaataagtttctctt-gaattttcagaatagtaaatcagagttgttttac |
41313088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 37803037 - 37803088
Alignment:
| Q |
39 |
aataaatgagtttctctttgaattttcataatagtaaattagaattgttttac |
91 |
Q |
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| T |
37803037 |
aataaataagtttctctt-gaattttcagaatagtaaattagagttgttttac |
37803088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 37626497 - 37626548
Alignment:
| Q |
39 |
aataaatgagtttctctttgaattttcataatagtaaattagaattgttttac |
91 |
Q |
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| T |
37626497 |
aataaataagtttctctt-gaattttcagaatagtaaatcagagttgttttac |
37626548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 2584194 - 2584243
Alignment:
| Q |
7 |
aataacataaaactccatgacttcaaaataaaaataaatgagtttctctt |
56 |
Q |
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| T |
2584194 |
aataacttaaaactccttgccttcaaaataaaaataaataaatttctctt |
2584243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 19216542 - 19216491
Alignment:
| Q |
39 |
aataaatgagtttctctttgaattttcataatagtaaattagaattgttttac |
91 |
Q |
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| T |
19216542 |
aataaataagtttctctt-gaattttcagaatagtaaatcagagttgttttac |
19216491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2006 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold2006
Description:
Target: scaffold2006; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 840 - 891
Alignment:
| Q |
39 |
aataaatgagtttctctttgaattttcataatagtaaattagaattgttttac |
91 |
Q |
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| T |
840 |
aataaataagtttctctt-gaattttcagaatagtaaataagagttgttttac |
891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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