View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0745_low_5 (Length: 466)
Name: NF0745_low_5
Description: NF0745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0745_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 20 - 459
Target Start/End: Complemental strand, 51979365 - 51978929
Alignment:
| Q |
20 |
gacatcatcaaacctgaagattcacaaatctggtaattgggatcttttttgagagaatgcgaacatcatgctgaatgggctcataaattaacttccattt |
119 |
Q |
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| T |
51979365 |
gacatcatcaaacctgaagattcacaaatctggtaattgggatcttttttgagagaatgcgaacatcatgctgaatgggctcataaattaacttccattt |
51979266 |
T |
|
| Q |
120 |
ccattcaggtgtcaaaggtttaaatacaagctttgcttgacattcattgatcggagcattgtagatctgcacacacaaaattgatctcctgaatatgtag |
219 |
Q |
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| T |
51979265 |
ccattcaggtgtcaaaggtttaaatacaagctttgcttgacattcattgatcggagcattgtagatctgcacacacaaaattgatctcctgaatatgtag |
51979166 |
T |
|
| Q |
220 |
taatcatcatgtgaaaacaattgtctagaagaagnnnnnnnnctcacaacattaacctatttggatgtgaagacatccaaatatagaaatgcttaaattt |
319 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |||| | ||||||||||||||||||||||||||||||||| |
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| T |
51979165 |
taatcatcatgtgaaaacaattgtctagaagaagaaaaaaaactcacaacattaacttatt---aactgaagacatccaaatatagaaatgcttaaattt |
51979069 |
T |
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| Q |
320 |
catagagcatcattccttttaattaagaattctcattgaaaattcttgtatccgtagaacagacgagtttaatcacatagacaggataaaaagacaacat |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
51979068 |
catagagcatcattccttttaattaagaattctcattgaaaattcttgtatccgtagaacagatgagtttaatcacatagacaggataaaaagacaacat |
51978969 |
T |
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| Q |
420 |
ctaaccataccaccgtagtgcgattagaacagaataatct |
459 |
Q |
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| T |
51978968 |
ctaaccataccaccgtagtgcgattagaacagaataatct |
51978929 |
T |
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