View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0745_low_8 (Length: 433)

Name: NF0745_low_8
Description: NF0745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0745_low_8
NF0745_low_8
[»] chr7 (8 HSPs)
chr7 (17-318)||(33427829-33428130)
chr7 (316-433)||(33427552-33427669)
chr7 (25-397)||(33424467-33424847)
chr7 (169-397)||(33416546-33416779)
chr7 (216-397)||(33410749-33410932)
chr7 (214-365)||(33436761-33436912)
chr7 (25-123)||(33410565-33410662)
chr7 (17-71)||(33416406-33416460)
[»] chr1 (2 HSPs)
chr1 (221-356)||(24984717-24984852)
chr1 (221-356)||(24990547-24990682)


Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-162; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 17 - 318
Target Start/End: Complemental strand, 33428130 - 33427829
Alignment:
Q  17 tgccgttcactttgaaaacattgtgtcttgaagggtcatagctgaaaactaaaaataaagaagataaaacgtaattagttcgtattagattaataccagt 116  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33428130 tgccgttcactttgaaaacattgtgtcttgaagggtcatagttgaaaactaaaaataaagaagataaaacgtaattagttcgtattagattaataccagt 33428031  T
Q  117 tcatctataaaagttaaaattatgatatacaataatgaatttagtaatcgagtatgaactaaataaactttaaaccaaatggaaaatcgtattatccttt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33428030 tcatctataaaagttaaaattatgatatacaataatgaatttagtaatcgagtatgaactaaataaactttaaaccaaatggaaaatcgtattatccttt 33427931  T
Q  217 tacataccaagattgtcaccaacatgaaaaactttgtcttgcgcccattgagtgtaattgaagttaatagtccagccattgtcatcacccacaatatgat 316  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33427930 tacataccaagattgtcaccaacacgaaaaactttgtcttacgcccattgagtgtaattgaagttaatagtccagccattgtcatcacccacaatatgat 33427831  T
Q  317 ca 318  Q
    ||    
T  33427830 ca 33427829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 316 - 433
Target Start/End: Complemental strand, 33427669 - 33427552
Alignment:
Q  316 tcagtagccattgcaactgaggaaaataaaaccattgaaatagctaggatcaagaacacacgagaagcccatttgatcaaaacttaggtgtgaaacatag 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||     
T  33427669 tcagtagccattgcaactgaggaaaataaaaccattgaaatagctaggatcaagaacacacgagaagcccatttgatcaaaatttaggtttgaaatatat 33427570  T
Q  416 ttctctcctaagtatgga 433  Q
    ||||||||||||||||||    
T  33427569 ttctctcctaagtatgga 33427552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 25 - 397
Target Start/End: Original strand, 33424467 - 33424847
Alignment:
Q  25 actttgaaaacattgtgtcttgaagggtcatagctgaaaactaaaaataaagaagataaaacgtaattagttcgtattagattaataccagttcatctat 124  Q
    ||||||||||||||||| ||||  || |||||| ||||||||||||| || |||||| ||||  ||||||||| ||||||||||||||  |||||||||     
T  33424467 actttgaaaacattgtgccttgccggatcatagttgaaaactaaaaagaa-gaagatgaaacaaaattagttcatattagattaatacatgttcatctaa 33424565  T
Q  125 a--aaagttaa----aattatgatatacaataatgaatttagtaatcgagtatgaactaaataaactttaaaccaaatggaaaatcgtattatcc-tttt 217  Q
    |  ||||||||    ||| || |||| || |||  | ||  | | | || ||| |||||||||||||| |||||||||| ||| | || || ||| ||||    
T  33424566 acaaaagttaattataatcataatatgcactaactagttatgcagttgattataaactaaataaacttgaaaccaaatgaaaatttgttttttccctttt 33424665  T
Q  218 acataccaagattgtcaccaacatgaaaaactttgtcttgcgcccattgagtgtaattgaagttaatagtccagccattgtcatcacccacaatatgatc 317  Q
    ||||||| |  ||||| |||||| | |||||||||||||| ||||||||||||||||  || | ||  ||||| || ||||||||||| ||||| |||||    
T  33424666 acatacctaagttgtctccaacacggaaaactttgtcttgagcccattgagtgtaatcaaaatcaacggtccaacccttgtcatcaccaacaatgtgatc 33424765  T
Q  318 agtagccattgcaactgaggaaaataaaaccattgaaatagctaggatcaagaacacacgagaag--cccatttgatcaaaa 397  Q
    ||| || ||||||||||| |||| ||||||||| ||||| |  |||||||| |  ||||||||||   ||||||||||||||    
T  33424766 agttgcaattgcaactgatgaaagtaaaaccatggaaatggaaaggatcaaaactacacgagaagaagccatttgatcaaaa 33424847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 169 - 397
Target Start/End: Original strand, 33416546 - 33416779
Alignment:
Q  169 tatgaactaaataaactttaaaccaaatggaaaatcgtattatccttttacataccaagattgtcaccaacatgaaaaactttgtcttgcgcccattgag 268  Q
    |||||||||||||||||| |||||||||||| | |  | || |||||||||||||| || ||||| |||||| |||||||||||||||| ||||||||||    
T  33416546 tatgaactaaataaacttgaaaccaaatggacatttattttttccttttacatacctaggttgtctccaacacgaaaaactttgtcttgagcccattgag 33416645  T
Q  269 tgtaattgaagttaatagtccagccattgtcatcacccacaatatgatcagt---agccattgcaactgaggaaaataaaaccattgaaatagctaggat 365  Q
    ||||||  || | ||  ||||| || ||||||||||| ||||||| ||||||   ||| ||||||||||| |||| ||||||||| ||||| |  |||||    
T  33416646 tgtaatcaaaatcaacggtccaacccttgtcatcaccaacaatataatcagttgcagcaattgcaactgatgaaagtaaaaccatggaaatggaaaggat 33416745  T
Q  366 caagaacacacgagaag--cccatttgatcaaaa 397  Q
    ||| |  ||||||||||   ||||||||||||||    
T  33416746 caaaactacacgagaagaagccatttgatcaaaa 33416779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 216 - 397
Target Start/End: Original strand, 33410749 - 33410932
Alignment:
Q  216 ttacataccaagattgtcaccaacatgaaaaactttgtcttgcgcccattgagtgtaattgaagttaatagtccagccattgtcatcacccacaatatga 315  Q
    ||||||||| |||||||| |||||| |||||||||||||||| ||||| ||||||||||  || | ||  ||||| || ||||||||||| ||||| |||    
T  33410749 ttacatacctagattgtctccaacacgaaaaactttgtcttgagcccactgagtgtaatcaaaatcaacggtccaacccttgtcatcaccaacaatgtga 33410848  T
Q  316 tcagtagccattgcaactgaggaaaataaaaccattgaaatagctaggatcaagaacacacgagaag--cccatttgatcaaaa 397  Q
    ||||| || ||||||||||| |||| ||||||||| |||||||  |||||||| |  ||||||||||   ||||||||||||||    
T  33410849 tcagttgcaattgcaactgatgaaagtaaaaccatggaaatagaaaggatcaaaactacacgagaagaagccatttgatcaaaa 33410932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 214 - 365
Target Start/End: Original strand, 33436761 - 33436912
Alignment:
Q  214 ttttacataccaagattgtcaccaacatgaaaaactttgtcttgcgcccattgagtgtaattgaagttaatagtccagccattgtcatcacccacaatat 313  Q
    |||| ||||||||| |||||||||||| | ||||| ||||| || | ||| ||||| || || || | || |||||| || ||||||||||| ||||| |    
T  33436761 ttttccataccaaggttgtcaccaacacggaaaaccttgtcctgagtccactgagtatagttaaaatcaacagtccaacccttgtcatcaccaacaatgt 33436860  T
Q  314 gatcagtagccattgcaactgaggaaaataaaaccattgaaatagctaggat 365  Q
    |||| |  |||||||||||||| ||||  |||||||||||||| || |||||    
T  33436861 gatcggctgccattgcaactgaagaaagcaaaaccattgaaattgcgaggat 33436912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 33410565 - 33410662
Alignment:
Q  25 actttgaaaacattgtgtcttgaagggtcatagctgaaaactaaaaataaagaagataaaacgtaattagttcgtattagattaataccagttcatcta 123  Q
    ||||||||||||||||| ||||  || |||||| ||||||||||||| |||| |||| ||||  ||||||||| ||||||||||||||  |||||||||    
T  33410565 actttgaaaacattgtgccttgccggatcatagttgaaaactaaaaagaaag-agatgaaacaaaattagttcatattagattaatacatgttcatcta 33410662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 33416406 - 33416460
Alignment:
Q  17 tgccgttcactttgaaaacattgtgtcttgaagggtcatagctgaaaactaaaaa 71  Q
    |||| |||||||| ||||||||||| ||||||||||||||| |||||||||||||    
T  33416406 tgccattcactttaaaaacattgtgccttgaagggtcatagttgaaaactaaaaa 33416460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 221 - 356
Target Start/End: Complemental strand, 24984852 - 24984717
Alignment:
Q  221 taccaagattgtcaccaacatgaaaaactttgtcttgcgcccattgagtgtaattgaagttaatagtccagccattgtcatcacccacaatatgatcagt 320  Q
    ||||||| |||||||||||| |||||||||||||||| |||||||||||||| ||||| | ||  ||||| || || |||||||||||||  |||||||     
T  24984852 taccaaggttgtcaccaacacgaaaaactttgtcttgggcccattgagtgtagttgaaatcaacggtccaacccttttcatcacccacaacgtgatcagc 24984753  T
Q  321 agccattgcaactgaggaaaataaaaccattgaaat 356  Q
     |||||||| ||||||||||  |||||||| |||||    
T  24984752 tgccattgctactgaggaaagcaaaaccatggaaat 24984717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 221 - 356
Target Start/End: Complemental strand, 24990682 - 24990547
Alignment:
Q  221 taccaagattgtcaccaacatgaaaaactttgtcttgcgcccattgagtgtaattgaagttaatagtccagccattgtcatcacccacaatatgatcagt 320  Q
    ||||||| |||||||||||| |||||||||||||||| |||||||||||||| ||||| | ||  ||||| || || |||||||||||||  |||||||     
T  24990682 taccaaggttgtcaccaacacgaaaaactttgtcttgggcccattgagtgtagttgaaatcaacggtccaacccttttcatcacccacaacgtgatcagc 24990583  T
Q  321 agccattgcaactgaggaaaataaaaccattgaaat 356  Q
     |||||||| ||||||||||  |||||||| |||||    
T  24990582 tgccattgctactgaggaaagcaaaaccatggaaat 24990547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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