View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0746_high_2 (Length: 430)
Name: NF0746_high_2
Description: NF0746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0746_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 13 - 402
Target Start/End: Complemental strand, 4301484 - 4301094
Alignment:
| Q |
13 |
aaaattaagtcattggctgaatcgaagtacagatttagagatgaaagaaactaaaaattgggagttagtattggacctttctgtaagtattaaactcatt |
112 |
Q |
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| T |
4301484 |
aaaattaagtcattggttgaatccaagtacagatttagagatgaaagaaactaaaaattgggagttagtattggacctttctgtaagtattaaactcatt |
4301385 |
T |
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| Q |
113 |
tggagttgatttatctgttctaattcgcaagaatatccattccaggttatcaaaatcccaagaacactcgatgatctttccggaataaaatgagggttct |
212 |
Q |
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| T |
4301384 |
tggagttgatttatctgttctaattcgcaagaatatccattccaggttatcaaaatcccaagaacactcgatgatctttccggaataaaatgagggttct |
4301285 |
T |
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| Q |
213 |
gtgccatctgcagatttaatgtttaccagaaagcaattaaagcaagtgaaattgaaataaaacaaactatgaattgtggacttcaagaagaagaagaaaa |
312 |
Q |
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| T |
4301284 |
gtgccatctgcagatttaatgtttaccagaaagcaattaaagcaagtgaaattgaaataaaacaaactatgaattgtggacttcaagaagaagaaaaaaa |
4301185 |
T |
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| Q |
313 |
caaaataata-ttgaattaaaacaaaagacaacgtcatgtattagtgttactaaagcatcatccttctcaacccactttttggtgggcact |
402 |
Q |
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| T |
4301184 |
caaaataatatttgaattaaaacaaaagacaacgtcatgtattagtgttactaaagcatcatccttctcaacccactttttggtgggcact |
4301094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 201
Target Start/End: Original strand, 24367134 - 24367250
Alignment:
| Q |
85 |
ggacctttctgtaagtattaaactcatttggagttgatttatctgttctaattcgcaagaatatccattccaggttatcaaaatcccaagaacactcgat |
184 |
Q |
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||||||| |||||||||| || ||||| |||||||| ||||||||||| | |||| |||||||||||| ||||| |||||||| ||||||||| |
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| T |
24367134 |
ggaccttcttgtaagtatttaagtcattgggagttgacttatctgttctgactcgcttgaatatccattcgtttctatcaccatcccaagcacactcgat |
24367233 |
T |
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| Q |
185 |
gatctttccggaataaa |
201 |
Q |
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| T |
24367234 |
gatttttccagaataaa |
24367250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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