View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0746_low_1 (Length: 710)
Name: NF0746_low_1
Description: NF0746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0746_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 58 - 603
Target Start/End: Original strand, 54918074 - 54918626
Alignment:
| Q |
58 |
gtggaagtttgtgcttgctacctagtcaaaacaaccctagtataatctcatataaaagttccagcttgaataaggtcccaaagacacaatggatttataa |
157 |
Q |
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| T |
54918074 |
gtggaagtttgtgcttgctacctagtcaaaacaaccctagtataatctcatataagagttccagcttgaataaggtcccaaagacacaatggatttat-- |
54918171 |
T |
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| Q |
158 |
tgttcgtctcatttggctttatttccatttgatctcatgctttcgtcactaaattcctctatgttttgtgccacctttaaattcatgcatcaaaacaaac |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
54918172 |
-gttcgtctcatttggctttatttccatttgatctcatgctttcgtcactaaattcctctatgttttgtgtcacctttaaattcatgcatcaaaacaaac |
54918270 |
T |
|
| Q |
258 |
aaatttttattcccatatcttcttcttaagccatag----------aaaaagtgcatattacctttttggtgagtaaaaggtagagaagagctttttgcc |
347 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
54918271 |
aaatttttattcccatatcttcttcttaagccatagaaagggatagaaaaagtgcatattacctttttggtgagtaaaaggtagaggagagctttttgcc |
54918370 |
T |
|
| Q |
348 |
cacacgatctgaatctactgcatcagatgataagaatgacaaaagtccaagtcctatccttccactcactcgaaataaaacatcagatgagtaataacaa |
447 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
54918371 |
cacacgatctgaatctactgcatcagatgataagaatgacaaaagtccaagtcctatccttccactcactcgaaataaaacatcagatgagtaaaaacaa |
54918470 |
T |
|
| Q |
448 |
tgaaaattgttccataatatcatgaaggattaagaaaagaggtagtagagtaaaacagggatatcaaaattaaataaactaagaaaacaagataaaagat |
547 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
54918471 |
tgaaaattgttccataatatcatgaaggattaagaaaagaggtagtagagtaaaacagggatatcaaaattaaataaactaagaaaacgagataaaagat |
54918570 |
T |
|
| Q |
548 |
ggaagcaaacctggtgatatcaacacgatattgagctctaaactcgatgaagagat |
603 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54918571 |
ggaagcaaacctggtgatatcaacacgatattgagctctaaactcgatgaagagat |
54918626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 54917989 - 54918037
Alignment:
| Q |
11 |
cagagacagatcaccccattgttcatcccatctagtattcaaaaatcgt |
59 |
Q |
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|||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
54917989 |
cagagacaaatcaccccattgttcatcccacctagtattcaaaaatcgt |
54918037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 273 - 322
Target Start/End: Complemental strand, 54911684 - 54911635
Alignment:
| Q |
273 |
tatcttcttcttaagccatagaaaaagtgcatattacctttttggtgagt |
322 |
Q |
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||||||||||| ||||| |||||||||| ||| |||||||||||||||| |
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| T |
54911684 |
tatcttcttctaaagccctagaaaaagtatatagtacctttttggtgagt |
54911635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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