View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0746_low_11 (Length: 370)
Name: NF0746_low_11
Description: NF0746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0746_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 89 - 216
Target Start/End: Complemental strand, 26887271 - 26887144
Alignment:
| Q |
89 |
agatgaaaatgggtatgacatttcttttccatggccttcttatctgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttttccaaaa |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26887271 |
agatgaaaatgggtatgacatttcttttccatggccttcttatctgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttttccaaaa |
26887172 |
T |
|
| Q |
189 |
ttgttcttgagctgcaagttaagataaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
26887171 |
ttgttcttgagctgcaagttaagataaa |
26887144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 89 - 216
Target Start/End: Original strand, 51855153 - 51855280
Alignment:
| Q |
89 |
agatgaaaatgggtatgacatttcttttccatggccttcttatctgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttttccaaaa |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
51855153 |
agatgaaaatgggtatgacatttcttttccatggccttcttatctgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttatccaaaa |
51855252 |
T |
|
| Q |
189 |
ttgttcttgagctgcaagttaagataaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
51855253 |
ttgttcttgagctgcaagttaagataaa |
51855280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 89 - 216
Target Start/End: Complemental strand, 35043328 - 35043201
Alignment:
| Q |
89 |
agatgaaaatgggtatgacatttcttttccatggccttcttatctgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttttccaaaa |
188 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35043328 |
agatgaaaatgagtttgacatttcttttccatggccttcttatctgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttctccaaaa |
35043229 |
T |
|
| Q |
189 |
ttgttcttgagctgcaagttaagataaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
35043228 |
ttgttcttgagctgcaagttaagataaa |
35043201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 89 - 216
Target Start/End: Original strand, 8944388 - 8944515
Alignment:
| Q |
89 |
agatgaaaatgggtatgacatttcttttccatggccttcttatctgtacttttcacatcctcagcaatagagactgcaggtttcaaatacttttccaaaa |
188 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||| |
|
|
| T |
8944388 |
agatgaaaatgggtattacatttcttttccatggccttcttatctgtacttttcacatcctcagcaatagaaactgtaggtttcaaatacttctccaaaa |
8944487 |
T |
|
| Q |
189 |
ttgttcttgagctgcaagttaagataaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
8944488 |
ttgttcttgagctgcaagttaagataaa |
8944515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5346 times since January 2019
Visitors: 4850