View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0746_low_17 (Length: 322)

Name: NF0746_low_17
Description: NF0746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0746_low_17
NF0746_low_17
[»] chr8 (8 HSPs)
chr8 (85-224)||(11975009-11975148)
chr8 (85-218)||(12014506-12014639)
chr8 (85-223)||(11984442-11984580)
chr8 (85-218)||(12004839-12004972)
chr8 (85-218)||(11980090-11980223)
chr8 (85-218)||(12009931-12010064)
chr8 (85-218)||(11991954-11992087)
chr8 (85-217)||(11999622-11999754)


Alignment Details
Target: chr8 (Bit Score: 128; Significance: 4e-66; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 85 - 224
Target Start/End: Complemental strand, 11975148 - 11975009
Alignment:
Q  85 caaaggaattgggtttgaaatagttaagcaattagcttcggctggaatcaaagtagtgcttacagcaagagatgagaaaagaggtcttcatgctttggaa 184  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  11975148 caaaggaattgggtttgaaatagttaagcaattagcttcagctggaatcaaagtggtgcttacagcaagagatgagaaaagaggtcttcatgctttgcaa 11975049  T
Q  185 acactcaaagcctatggtttatctgattttgttgcctttc 224  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  11975048 acactcaaagcctatggtttatctgattttgttgcctttc 11975009  T

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Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 85 - 218
Target Start/End: Complemental strand, 12014639 - 12014506
Alignment:
Q  85 caaaggaattgggtttgaaatagttaagcaattagcttcggctggaatcaaagtagtgcttacagcaagagatgagaaaagaggtcttcatgctttggaa 184  Q
    |||||| ||||| ||||| ||||||||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  12014639 caaagggattggatttgagatagttaagcagttagcttcagctggaatcaaagtggtgcttactgcaagagatgagaaaagaggtcttcatgctttggaa 12014540  T
Q  185 acactcaaagcctatggtttatctgattttgttg 218  Q
    ||||||||||||| ||||||||||||||||||||    
T  12014539 acactcaaagcctctggtttatctgattttgttg 12014506  T

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Target: chr8; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 85 - 223
Target Start/End: Complemental strand, 11984580 - 11984442
Alignment:
Q  85 caaaggaattgggtttgaaatagttaagcaattagcttcggctggaatcaaagtagtgcttacagcaagagatgagaaaagaggtcttcatgctttggaa 184  Q
    |||||||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11984580 caaaggaattgggtttgagatagttaagcagttagcttcagctggaatcaaagttgtgcttacagcaagagatgagaaaagaggtcttcatgctttggaa 11984481  T
Q  185 acactcaaagcctatggtttatctgattttgttgccttt 223  Q
    ||||||||||| | |||| | || |||||||||| ||||    
T  11984480 acactcaaagcttctggtctttcagattttgttgtcttt 11984442  T

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Target: chr8; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 85 - 218
Target Start/End: Complemental strand, 12004972 - 12004839
Alignment:
Q  85 caaaggaattgggtttgaaatagttaagcaattagcttcggctggaatcaaagtagtgcttacagcaagagatgagaaaagaggtcttcatgctttggaa 184  Q
    |||||||||||| || || ||||| | |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12004972 caaaggaattggattagagatagtaaggcaattagcttcagctggaatcaaagtggtgcttacagcaagagatgagaaaagaggtcttcatgctttggaa 12004873  T
Q  185 acactcaaagcctatggtttatctgattttgttg 218  Q
    ||||||||||| | ||||||||||||||||||||    
T  12004872 acactcaaagcatctggtttatctgattttgttg 12004839  T

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Target: chr8; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 85 - 218
Target Start/End: Complemental strand, 11980223 - 11980090
Alignment:
Q  85 caaaggaattgggtttgaaatagttaagcaattagcttcggctggaatcaaagtagtgcttacagcaagagatgagaaaagaggtcttcatgctttggaa 184  Q
    |||||||||||| || || ||||| | |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  11980223 caaaggaattggattagagatagtaaggcaattagcttcagctggaatcaaagtggtgcttacagcaagagatgagaaaagaggtcttcatgcattggaa 11980124  T
Q  185 acactcaaagcctatggtttatctgattttgttg 218  Q
    ||||| ||||| | ||||||||||||||||||||    
T  11980123 acacttaaagcatctggtttatctgattttgttg 11980090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 85 - 218
Target Start/End: Complemental strand, 12010064 - 12009931
Alignment:
Q  85 caaaggaattgggtttgaaatagttaagcaattagcttcggctggaatcaaagtagtgcttacagcaagagatgagaaaagaggtcttcatgctttggaa 184  Q
    ||||||||||||||| || |||||||| || |||||||| ||| |||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||    
T  12010064 caaaggaattgggttagagatagttaaacagttagcttcagctagaatcaaagtggtgctcacatcaagagatgagaaaagaggtcttcatgctttggaa 12009965  T
Q  185 acactcaaagcctatggtttatctgattttgttg 218  Q
    ||||||||||| | ||||||||||||||||||||    
T  12009964 acactcaaagcatctggtttatctgattttgttg 12009931  T

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Target: chr8; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 85 - 218
Target Start/End: Complemental strand, 11992087 - 11991954
Alignment:
Q  85 caaaggaattgggtttgaaatagttaagcaattagcttcggctggaatcaaagtagtgcttacagcaagagatgagaaaagaggtcttcatgctttggaa 184  Q
    ||||||||||||||| || ||||| ||||| |||||||| |||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  11992087 caaaggaattgggttagagatagtaaagcagttagcttcagctgtaatcaaagtggtgcttacatcaagagatgagaaaagaggtcttcatgctttggaa 11991988  T
Q  185 acactcaaagcctatggtttatctgattttgttg 218  Q
    ||||| ||||| | |||| | |||||||||||||    
T  11991987 acacttaaagcttctggtctttctgattttgttg 11991954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 85 - 217
Target Start/End: Complemental strand, 11999754 - 11999622
Alignment:
Q  85 caaaggaattgggtttgaaatagttaagcaattagcttcggctggaatcaaagtagtgcttacagcaagagatgagaaaagaggtcttcatgctttggaa 184  Q
    |||||||||||| ||||| ||||| | ||| |||||||| | |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  11999754 caaaggaattggatttgagatagtaaggcagttagcttcagatggaatcaaagttgtgctgacagcaagagatgagaaaagaggtcttcatgctttggaa 11999655  T
Q  185 acactcaaagcctatggtttatctgattttgtt 217  Q
    ||||||||||| | |||| | || |||||||||    
T  11999654 acactcaaagcttctggtctttcagattttgtt 11999622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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