View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0746_low_18 (Length: 320)

Name: NF0746_low_18
Description: NF0746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0746_low_18
NF0746_low_18
[»] chr1 (1 HSPs)
chr1 (106-207)||(11918351-11918452)


Alignment Details
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 11918452 - 11918351
Alignment:
Q  106 atcaaagtaacagctaggacaactattatgttgactaaatcatagttatctattatctacctactctaccctttattaggtcttaaggtataactttatt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11918452 atcaaagtaacagctaggacaactattatgttgactaaatcatagttatctattatctacctactctaccctttattaggtcttaaggtataactttatt 11918353  T
Q  206 gc 207  Q
    ||    
T  11918352 gc 11918351  T

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