View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0746_low_2 (Length: 631)
Name: NF0746_low_2
Description: NF0746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0746_low_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 85 - 631
Target Start/End: Original strand, 5469337 - 5469876
Alignment:
| Q |
85 |
acagacactagatctgcacccaaaatcttaaggtaatatgtatatgagtacctatct-acatccaacattgaccattcatttatagtcgatgttgaatta |
183 |
Q |
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| T |
5469337 |
acagacactggatatgcacccaaaatcataaggtaat--------gagtacctatcttacatccaacattgaccattcatttatagtcgatgttgaatta |
5469428 |
T |
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| Q |
184 |
accactcacacttgaattcaacaatccaannnnnnnttatacacccaacattgaacttaatttggaaggaaccatttacacttgaattcaacaatcttac |
283 |
Q |
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| T |
5469429 |
accactcacacttgtattcaacaatccaacccccccttatacacccaacattgaacttaatttggaaggaaccatttacacttgaattcaacaatcttac |
5469528 |
T |
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| Q |
284 |
cctcaagtgagtcttctacatcttatatttgatctaacaccatgatctacttccactctccgaccaagttgaagcaagcccttaatacaatttgttggat |
383 |
Q |
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| T |
5469529 |
cctcaagtgagtcttctacatcttatacttgatctaacaccatgatctacttccactctccggccaagttgaagcaagcccttaatacaatttgttggat |
5469628 |
T |
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| Q |
384 |
agtgtccatgtgagggcagcatcgagcaaacatatcaatactataggaccaccatgagaggataatgtcacattttcacctaaaaactcaagacactaga |
483 |
Q |
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| T |
5469629 |
agtgtccatgtgagggcagcatcgagcaaacatgtcaatactataggaccatcaagagaggataatgtcacattttcacctaaaaactcaagacactaaa |
5469728 |
T |
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| Q |
484 |
aatatatgggtcacttcttttatatatcaaacatttttattcaatgtgagactaaccactcacacttaaaccccacacttttttggtcaaacttaaaccc |
583 |
Q |
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| T |
5469729 |
aatatatgggtcacttcttttatatatcaaacatttttattcaatgtgagactaaccactcacacttaaaccccacacttttttggtcaaacttaaaccc |
5469828 |
T |
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| Q |
584 |
cacatctattaataaattaactagttatattttcacatagaaaaatgt |
631 |
Q |
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| T |
5469829 |
cacatctattaataaattaactagttacattttcacataaaaaaatgt |
5469876 |
T |
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