View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0746_low_22 (Length: 277)
Name: NF0746_low_22
Description: NF0746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0746_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 54 - 236
Target Start/End: Original strand, 32801112 - 32801294
Alignment:
| Q |
54 |
caaaaacaacagacttctaatacaatttttggaaaagaaaaatgaaagaaacaaacatcattcactgctatgagacgcataagcatattcttaatttcat |
153 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32801112 |
caaaaacaacagacttctaatacaatttttggaaaagaaaaatgaaagaaacaaacatcattcactgctatgagacacataagcatattcttaatttcat |
32801211 |
T |
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| Q |
154 |
tcaagtccggaaatcctcctgaaatgaaggacaaactggtaaaccttttcagggtcaggaagaactttcttgacagattctct |
236 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32801212 |
tcaagtccggaaatcttcctgaaatgaaggacaaactggtaaaccttttcagggtcaggaagaactttcttgacagattctct |
32801294 |
T |
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