View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0746_low_24 (Length: 259)
Name: NF0746_low_24
Description: NF0746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0746_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 57 - 239
Target Start/End: Original strand, 2244511 - 2244693
Alignment:
| Q |
57 |
ctcaaaaatacaaattccttaatgtgtagtacattgcaattgcaatttcgtcaaaggtagatgtcatgctttatataggtgactccatggatcaatccat |
156 |
Q |
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| T |
2244511 |
ctcaaaaatacaaattccttaatgtgtagtacaatgcaattgcaatttcgtcaaaggtagatgtcatgctttatataggtgactccatggatcaatccat |
2244610 |
T |
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| Q |
157 |
gtcatcataaggacaaaacaagaatataaaaaagatgtttctacttcataaatgagaatcaaatttatcaaggtcatgttcat |
239 |
Q |
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| T |
2244611 |
gtcatcataaggacaaaacaagaatataaaaaagatgtttctacttcataaatgagaatcaaatttatcaaggtcatgttcat |
2244693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 108 - 236
Target Start/End: Complemental strand, 2126250 - 2126120
Alignment:
| Q |
108 |
caaaggtagatgtcatgctttatataggtgactccatggatcaatccatgtcatcataaggacaaaacaagaatataaaaaagatgtttctactt--cat |
205 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
2126250 |
caaaggtagatgtcataatttatataggtgaccccatggatcaatccatgccatcataaggacaaaacaagaatataaaaaagatgttcctacttcccag |
2126151 |
T |
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| Q |
206 |
aaatgagaatcaaatttatcaaggtcatgtt |
236 |
Q |
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| T |
2126150 |
aaatgaaaatcaaatttatcaatgtcatgtt |
2126120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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