View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0746_low_3 (Length: 534)
Name: NF0746_low_3
Description: NF0746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0746_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 71 - 505
Target Start/End: Original strand, 31616927 - 31617362
Alignment:
| Q |
71 |
gagtgagatgaatgaaaatcaactacattggtgtgaagagaaaaatagcaaagtgagagtcatagatgggaaactacaaagagattccactccacnnnnn |
170 |
Q |
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| T |
31616927 |
gagtgacatgaatgaaaatcaactacattggtgtgaagagaaaaatagcaaagtgagagtcatagatgggaaactacaaagagattccactccacttttt |
31617026 |
T |
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| Q |
171 |
nnnccatcacattgacccacaaaaaaggtttatgtaaattaatattgcttcatgagtggatgatgaatatgcatgaattcatttcatgcatataaaggaa |
270 |
Q |
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| T |
31617027 |
tttccatcacattgacccacaaaaaaggtttatgtaaattaatattgcttcatgagtggatgatgaatatgcatgaatgcatttcatgcatataaaggaa |
31617126 |
T |
|
| Q |
271 |
tattcataacatgctttttgtaaatatggaattaaagaaaatggagaaggaccctacaaatcaaagtgaaacatatgtggagt-gcatatggaatatttt |
369 |
Q |
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| T |
31617127 |
tattcataacatgctttttgtaaatatggaattaaagaaaatggagaaggaccctacaaatcaaagtgaaacatatgtggagtagcatatggaatatttt |
31617226 |
T |
|
| Q |
370 |
ggggtatgaaattcatggaaagatgggtaaaggtagaagaggtgatgtgttattgatgaatattgaaagtgaaagaccaaagacaaaggaaggtacaaga |
469 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31617227 |
ggggtatgaaattcatggaaagatgggtaaaggtggaagaggtgatgtgttattgatgaatattgaaagtgaaagaccaaagacaaaggaaggtacaaga |
31617326 |
T |
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| Q |
470 |
taaagacaatattagctttagttattgctttagctt |
505 |
Q |
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| T |
31617327 |
taaagacaatattagctttagttattgctttagctt |
31617362 |
T |
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