View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0746_low_33 (Length: 224)
Name: NF0746_low_33
Description: NF0746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0746_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 8e-54; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 9336620 - 9336730
Alignment:
| Q |
1 |
caccttttctctttctcatcaagcctaaacacatcaatccatacaggaacacaataattttcatatctatccaccagcaacaactcaaactcactactct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9336620 |
caccttttctctttctcatcaagcctaaacacatcaatccatacaggaacacaataattttcatatctatccaccagcaacaactcaaactcactactct |
9336719 |
T |
|
| Q |
101 |
caaccaagaat |
111 |
Q |
| |
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| ||||||||| |
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| T |
9336720 |
cgaccaagaat |
9336730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 9329916 - 9330026
Alignment:
| Q |
1 |
caccttttctctttctcatcaagcctaaacacatcaatccatacaggaacacaataattttcatatctatccaccagcaacaactcaaactcactactct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9329916 |
caccttttctctttctcatcaagcctaaacacatcaatccatacaggaacacgataattttcatatctatccaccagcaacaactcaaactcactactct |
9330015 |
T |
|
| Q |
101 |
caaccaagaat |
111 |
Q |
| |
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| ||||||||| |
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| T |
9330016 |
cgaccaagaat |
9330026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 9395351 - 9395452
Alignment:
| Q |
13 |
ttctcatcaagcctaaacacatcaatccatacaggaacac---aataattttcatatctatccaccagcaacaactcaaactcactactctcaaccaaga |
109 |
Q |
| |
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|||||||||||||||||||||||||||| |||| ||||| || ||||| |||| ||||||| |||||||||| ||| |||||| |||| ||||||| |
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| T |
9395351 |
ttctcatcaagcctaaacacatcaatccttacaataacacgatcatcatttttatatatatccactagcaacaactgaaagtcactagtctcgaccaaga |
9395450 |
T |
|
| Q |
110 |
at |
111 |
Q |
| |
|
|| |
|
|
| T |
9395451 |
at |
9395452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 9756460 - 9756498
Alignment:
| Q |
1 |
caccttttctctttctcatcaagcctaaacacatcaatc |
39 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
9756460 |
caccttttctctttctcatcaagcctatacacatcaatc |
9756498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 450143 - 450102
Alignment:
| Q |
5 |
ttttctctttctcatcaagcctaaacacatcaatccatacag |
46 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
450143 |
ttttctccttctcatcaagcctaaacacatcaatccatacag |
450102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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