View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0746_low_34 (Length: 211)
Name: NF0746_low_34
Description: NF0746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0746_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 25377106 - 25376973
Alignment:
| Q |
1 |
ttggacctatgaaaaaattggtccaacatgtacttgnnnnnnnaaccctcaaattaaatggttccaccaaatcttatcatagtccatcaacaccaaatca |
100 |
Q |
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| T |
25377106 |
ttggacctatggaaaaattggtccaacatatacttgtttttttaaccctcaaattagatggttccaccaaatcttatcatagtccatcaacaccaaatta |
25377007 |
T |
|
| Q |
101 |
aacctacaacactttctcatgttcatctcactcg |
134 |
Q |
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|| ||||||||||||||||||||| |||| |||| |
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| T |
25377006 |
aatctacaacactttctcatgttcttctctctcg |
25376973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 41422298 - 41422426
Alignment:
| Q |
1 |
ttggacctatgaaaaaattggtccaacatgtacttgnnnnnnnaaccctcaaattaaatggttccaccaaatcttatcatagtccatcaacaccaaatca |
100 |
Q |
| |
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| T |
41422298 |
ttggatctatggaaaaattggtccaacatgaacctgtttttttaaccctcaaattagatggttccaccaaatcttattatagtccatcaacaccaaatca |
41422397 |
T |
|
| Q |
101 |
aacctacaacactttctcatgttcatctc |
129 |
Q |
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| T |
41422398 |
aacctacaatactttctcatgttcttctc |
41422426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 24994686 - 24994745
Alignment:
| Q |
45 |
accctcaaattaaatggttccaccaaatcttatcatagtccatcaacaccaaatcaaacc |
104 |
Q |
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| T |
24994686 |
accctcaaattagaagattgcaccaaatcttatcatagtccatcaacaccaaatcaaacc |
24994745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 21458359 - 21458413
Alignment:
| Q |
53 |
attaaatggttccaccaaatcttatcatagtccatcaacaccaaatcaaacctaca |
108 |
Q |
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|||| |||||||||| |||||||||||||||||| |||||| |||||||||||||| |
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| T |
21458359 |
attagatggttccac-aaatcttatcatagtccaccaacactaaatcaaacctaca |
21458413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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