View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0746_low_35 (Length: 210)
Name: NF0746_low_35
Description: NF0746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0746_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 89; Significance: 4e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 6515837 - 6515741
Alignment:
| Q |
103 |
actatgtaacggttgcagaggatcctaatctactggtgttttccgcttctttaacaatggtttgtttgcatttttccttgtgacgtg-tggtccctt |
198 |
Q |
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| T |
6515837 |
actatgtaacggttgcagaggatcctaatctactggtgttttccgcttctttaacaatggtttgtttgcatttttccttgtgacgtgttggtccctt |
6515741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 6515970 - 6515926
Alignment:
| Q |
60 |
ttttgtgtttgatttctatgttgttgggtatggatcatctgcaac |
104 |
Q |
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| T |
6515970 |
ttttttgtttgatttctatgttgttgggtatggatcatctgcaac |
6515926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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