View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0746_low_6 (Length: 425)
Name: NF0746_low_6
Description: NF0746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0746_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 30 - 388
Target Start/End: Original strand, 5977832 - 5978190
Alignment:
| Q |
30 |
atttgcacaacaccaggcaaggaaatgtggttctaaattctaatctgtaatggattttgggacttggtggtagatagaggtcataatggagctagtacat |
129 |
Q |
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| T |
5977832 |
atttgcacaacaccaggcaaggaaatgtggttctaaattctaatctgtaatggattttgggacttg-tggtagatagaggtcataatggagctagtacat |
5977930 |
T |
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| Q |
130 |
atatttaagtggatcttcgaggatttaaacccaattgtgtatcttgattgttaaacaacgaacattgaataaaaccatgcaatttgtatcaaagtttctt |
229 |
Q |
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| T |
5977931 |
atatttaagtggatcttcgaggatttaaacccaattgtgtatcttgattgttaaacaacgaacattgaataaaaccatgcaatttgtatcaaagtttctt |
5978030 |
T |
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| Q |
230 |
ctataaaaatcattatgcaaatcttattatttattcaaatctttgatgcattcttaagcaaccataaaaagattttgttagtttagataagaaaacaatg |
329 |
Q |
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| T |
5978031 |
ctataaaaatcattatgcaaatcttattatttatacaaatctttgatgcattcttaagcaaccataaaaagattttgttagtttagataagaaaacaatg |
5978130 |
T |
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| Q |
330 |
attttgttgccaccctatacataaaggataatc-aaacatagataggtgcactattttac |
388 |
Q |
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| T |
5978131 |
attttgttgccaccctatacataaaggctaatcaaaacatagataggtgcattattttac |
5978190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 201 - 356
Target Start/End: Original strand, 5978312 - 5978466
Alignment:
| Q |
201 |
aaaccatgcaatttgtatcaaagtttcttctataaaaatcattatgcaaatcttattatttattcaaatctttgatgcattcttaagcaaccataaaaag |
300 |
Q |
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| T |
5978312 |
aaaccatgtcatttgtatcaaagtttcttctatgaaaatcattatgcaaatcttattatt-atccaaatctttgatgcattcttaagcaaccataataaa |
5978410 |
T |
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| Q |
301 |
attttgttagtttagataagaaaacaatgattttgttgccaccctatacataaagg |
356 |
Q |
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| T |
5978411 |
aatttgttagcctagataagaaaacaatgatttggttgtcacgctatacataaagg |
5978466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 356
Target Start/End: Original strand, 14592959 - 14593021
Alignment:
| Q |
293 |
ataaaaagattttgttagtttagataagaaaacaatgattttgttgccaccctatacataaagg |
356 |
Q |
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| T |
14592959 |
ataaaaagattttgttagcctaaaaaagaaaacaataattttgttg-caccctaaacataaagg |
14593021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 201 - 356
Target Start/End: Original strand, 17515099 - 17515253
Alignment:
| Q |
201 |
aaaccatgcaatttgtatcaaagtttcttctataaaaatcattatgcaaatcttattatttattcaaatctttgatgcattcttaagcaaccataaaaag |
300 |
Q |
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|||||||| |||||||||||||||| |||||| |||| ||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
17515099 |
aaaccatgtcatttgtatcaaagtttattctatgaaaaccattacgcaaatcttattattg-ttcaaatcttcgatgcattcttaagcaaccataaaaag |
17515197 |
T |
|
| Q |
301 |
attttgttagtttagataagaaaacaatgattttgttgccaccctatacataaagg |
356 |
Q |
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|||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||| |
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| T |
17515198 |
attttgttagcctagataagaaaacaatgattctgttgtcacccaatacataaagg |
17515253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 328
Target Start/End: Original strand, 11401774 - 11401844
Alignment:
| Q |
260 |
ttattcaaatctt-tgatgcattcttaagcaaccataaa-aagattttgttagtttagataagaaaacaat |
328 |
Q |
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| T |
11401774 |
ttatacaaatcttatgatgcattcttaagcaacaataaataatattttgtttgcctagataagaaaacaat |
11401844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 328
Target Start/End: Original strand, 11411501 - 11411571
Alignment:
| Q |
260 |
ttattcaaatctt-tgatgcattcttaagcaaccataaa-aagattttgttagtttagataagaaaacaat |
328 |
Q |
| |
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|||| |||||||| ||||||||||||||||||| ||||| || |||||||| | |||||||||||||||| |
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| T |
11411501 |
ttatacaaatcttatgatgcattcttaagcaacaataaataatattttgtttgcctagataagaaaacaat |
11411571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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