View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0746_low_8 (Length: 396)

Name: NF0746_low_8
Description: NF0746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0746_low_8
NF0746_low_8
[»] chr3 (15 HSPs)
chr3 (15-229)||(12397080-12397294)
chr3 (115-224)||(6253436-6253545)
chr3 (95-218)||(22766545-22766668)
chr3 (98-227)||(12968320-12968449)
chr3 (98-227)||(26417695-26417824)
chr3 (32-216)||(14072713-14072895)
chr3 (99-227)||(17697621-17697749)
chr3 (98-227)||(23538182-23538311)
chr3 (190-227)||(19658091-19658128)
chr3 (190-229)||(17769097-17769136)
chr3 (190-229)||(19070398-19070437)
chr3 (102-227)||(21317404-21317527)
chr3 (190-218)||(11513858-11513886)
chr3 (152-227)||(12388941-12389017)
chr3 (190-218)||(27851562-27851590)
[»] chr6 (13 HSPs)
chr6 (32-227)||(17927804-17927999)
chr6 (98-227)||(25930488-25930617)
chr6 (56-227)||(23297961-23298132)
chr6 (77-227)||(19625823-19625972)
chr6 (32-227)||(12348108-12348304)
chr6 (38-217)||(21035019-21035197)
chr6 (74-218)||(32335843-32335987)
chr6 (111-227)||(7812025-7812140)
chr6 (99-218)||(16462658-16462776)
chr6 (192-227)||(25592632-25592667)
chr6 (32-89)||(30451476-30451533)
chr6 (101-227)||(10640426-10640553)
chr6 (190-218)||(18026866-18026894)
[»] scaffold0037 (1 HSPs)
scaffold0037 (32-230)||(78407-78606)
[»] chr5 (6 HSPs)
chr5 (53-227)||(16607523-16607698)
chr5 (99-228)||(31589017-31589144)
chr5 (74-218)||(20567821-20567965)
chr5 (177-227)||(2152988-2153038)
chr5 (111-218)||(17262750-17262856)
chr5 (190-227)||(27276241-27276277)
[»] scaffold0078 (1 HSPs)
scaffold0078 (19-227)||(31674-31880)
[»] chr4 (7 HSPs)
chr4 (51-227)||(10661092-10661269)
chr4 (51-227)||(10875237-10875414)
chr4 (52-227)||(10249821-10249996)
chr4 (100-227)||(11901196-11901323)
chr4 (152-227)||(17788072-17788149)
chr4 (99-216)||(11915720-11915837)
chr4 (74-227)||(13027786-13027939)
[»] scaffold0035 (1 HSPs)
scaffold0035 (51-230)||(29806-29986)
[»] chr8 (6 HSPs)
chr8 (80-227)||(18772627-18772773)
chr8 (98-227)||(26833043-26833173)
chr8 (98-227)||(22461653-22461782)
chr8 (190-227)||(17687989-17688026)
chr8 (196-229)||(18558025-18558058)
chr8 (190-227)||(19505549-19505585)
[»] chr1 (8 HSPs)
chr1 (77-227)||(17018592-17018741)
chr1 (15-227)||(18896452-18896663)
chr1 (32-227)||(20909420-20909615)
chr1 (83-204)||(18614929-18615046)
chr1 (101-227)||(21191805-21191931)
chr1 (196-229)||(20109983-20110016)
chr1 (99-227)||(23054380-23054507)
chr1 (190-218)||(8698865-8698893)
[»] scaffold0003 (1 HSPs)
scaffold0003 (52-227)||(715-891)
[»] chr7 (5 HSPs)
chr7 (52-227)||(16412003-16412179)
chr7 (149-227)||(13880115-13880194)
chr7 (190-228)||(18361692-18361729)
chr7 (190-227)||(7488015-7488052)
chr7 (190-218)||(15871207-15871235)
[»] chr2 (9 HSPs)
chr2 (32-220)||(24844149-24844337)
chr2 (98-227)||(18430902-18431031)
chr2 (15-227)||(26618982-26619192)
chr2 (109-227)||(10896406-10896523)
chr2 (98-227)||(18702747-18702876)
chr2 (99-227)||(20568144-20568272)
chr2 (51-171)||(24302880-24303000)
chr2 (190-218)||(22524888-22524916)
chr2 (190-218)||(25918661-25918689)
[»] scaffold0020 (1 HSPs)
scaffold0020 (137-227)||(144920-145010)
[»] scaffold0009 (1 HSPs)
scaffold0009 (19-227)||(268795-268997)
[»] scaffold0498 (1 HSPs)
scaffold0498 (128-227)||(310-408)
[»] scaffold0622 (1 HSPs)
scaffold0622 (34-227)||(2672-2865)
[»] scaffold0273 (1 HSPs)
scaffold0273 (98-227)||(5642-5770)
[»] scaffold0758 (1 HSPs)
scaffold0758 (111-227)||(4283-4397)
[»] scaffold0040 (1 HSPs)
scaffold0040 (149-227)||(1538-1617)
[»] scaffold0388 (2 HSPs)
scaffold0388 (38-122)||(4537-4621)
scaffold0388 (111-218)||(5398-5505)
[»] scaffold0324 (1 HSPs)
scaffold0324 (124-227)||(9971-10074)
[»] scaffold0311 (1 HSPs)
scaffold0311 (102-227)||(20082-20205)


Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 229
Target Start/End: Complemental strand, 12397294 - 12397080
Alignment:
Q  15 gacatcatcagaggttatgaagatcatcagaagccagaagactggaagcttcaaaagtggttaaatgttgttattatcaagcttatcattgcagaagaat 114  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12397294 gacatcatcagaggttctgaagatcatcagaagccagaagactggaagcttcaaaagtggttaaatgttgttattatcaagcttatcattgcagaagaat 12397195  T
Q  115 agaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaatagtacaattgtacaacc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  12397194 agaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaaaaggacaatagtacaattgtacaact 12397095  T
Q  215 actatctccactatt 229  Q
    |||||||||||||||    
T  12397094 actatctccactatt 12397080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 115 - 224
Target Start/End: Complemental strand, 6253545 - 6253436
Alignment:
Q  115 agaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaatagtacaattgtacaacc 214  Q
    ||||||||  ||||||||||||||||||||||| || |||| ||| ||||||||||||||| |||||||||||| ||||||||||||||||||||| |||    
T  6253545 agaagcctggagcaacggctaattcagaggaattttaaaggcattggatgcttattctttgaagaacgttggaaaaggacaatagtacaattgtactacc 6253446  T
Q  215 actatctcca 224  Q
    |||| |||||    
T  6253445 actacctcca 6253436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 95 - 218
Target Start/End: Original strand, 22766545 - 22766668
Alignment:
Q  95 gcttatcattgcagaag-aatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagagga 193  Q
    |||||| |||||||||| ||| |||||||| ||||||||||||||||||||||| ||||||| ||| ||||||||| |  || ||| ||  |||| ||||    
T  22766545 gcttatgattgcagaaggaatggaagcctagagcaacggctaattcagaggaat-ttgaaggcattggatgcttatccactgaagagcgcaggaaaagga 22766643  T
Q  194 caatagtacaattgtacaaccacta 218  Q
    |||||||||||||||||||||||||    
T  22766644 caatagtacaattgtacaaccacta 22766668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 98 - 227
Target Start/End: Complemental strand, 12968449 - 12968320
Alignment:
Q  98 tatcattgcagaagaatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaat 197  Q
    ||||||||||||||| ||||||| | ||| |||| |||||||| | |||| ||||||| ||| ||| ||||||||||| |||||||||||| ||||||||    
T  12968449 tatcattgcagaagactagaagcatgaagtaacgactaattcaaaagaat-ttgaaggcattggatacttattctttgaagaacgttggaaaaggacaat 12968351  T
Q  198 agtac-aattgtacaaccactatctccacta 227  Q
      ||| || ||||||||||||||||||||||    
T  12968350 tatacgaagtgtacaaccactatctccacta 12968320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 98 - 227
Target Start/End: Original strand, 26417695 - 26417824
Alignment:
Q  98 tatcattgcagaagaatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaat 197  Q
    ||||||| ||||||| ||||||  | ||||||||||||||||| | |||| ||||||| ||| |||||| ||||||||||||||||||||| | ||||||    
T  26417695 tatcattccagaagactagaagaatgaagcaacggctaattcaaaagaat-ttgaaggcattggatgctcattctttggagaacgttggaaaatgacaat 26417793  T
Q  198 agtac-aattgtacaaccactatctccacta 227  Q
     |||| || |||||||||||||||| |||||    
T  26417794 tgtacaaagtgtacaaccactatcttcacta 26417824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 32 - 216
Target Start/End: Complemental strand, 14072895 - 14072713
Alignment:
Q  32 tgaagatcatcagaagccagaagactggaagcttcaaaagtggttaaatgttgttattatcaagcttatcattgcagaag-aatagaagcctaaagcaac 130  Q
    |||||||||||||||||  |||||||||||  ||| || || |||||||||||||||| ||| || ||| | |||||||| ||| | |||||  ||||||    
T  14072895 tgaagatcatcagaagct-gaagactggaatattccaa-gttgttaaatgttgttattctcatgcatataactgcagaaggaatgggagcctggagcaac 14072798  T
Q  131 ggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaatagtacaattgtacaaccac 216  Q
    |  ||||| |||||||| ||||||| ||| ||||||||| | ||| ||||||  |||| |||||||||||||| ||||||||||||    
T  14072797 gaataatttagaggaat-ttgaaggcattggatgcttatccattgaagaacgcgggaaaaggacaatagtacacttgtacaaccac 14072713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 99 - 227
Target Start/End: Complemental strand, 17697749 - 17697621
Alignment:
Q  99 atcattgcagaag-aatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaat 197  Q
    ||||||||||||| |||||||||||  |||||  |||||||||||||||| ||||||| ||| ||||||||| | | | |||||   | || | ||||||    
T  17697749 atcattgcagaaggaatagaagcctggagcaatagctaattcagaggaat-ttgaaggcattggatgcttatccatagaagaacacagaaaaacgacaat 17697651  T
Q  198 agtacaattgtacaaccactatctccacta 227  Q
    ||||||||||||||||||||||||| ||||    
T  17697650 agtacaattgtacaaccactatctctacta 17697621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 227
Target Start/End: Original strand, 23538182 - 23538311
Alignment:
Q  98 tatcattgcagaagaatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaat 197  Q
    ||||||||||||||| | ||||  | || |||||| || |||| | |||| ||||||| |||  ||||||||||||| |||||||||| || ||||||||    
T  23538182 tatcattgcagaagactggaagaatgaaacaacggttatttcaaaagaat-ttgaaggcattgaatgcttattctttagagaacgttgaaaaaggacaat 23538280  T
Q  198 agtac-aattgtacaaccactatctccacta 227  Q
     |||| || ||||||||||||||||||||||    
T  23538281 tgtacgaagtgtacaaccactatctccacta 23538311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 19658091 - 19658128
Alignment:
Q  190 aggacaatagtacaattgtacaaccactatctccacta 227  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  19658091 aggacaataatacaattgtacaaccactatctccacta 19658128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 17769097 - 17769136
Alignment:
Q  190 aggacaatagtacaattgtacaaccactatctccactatt 229  Q
    |||||||||||| |||||||||||||||| ||||||||||    
T  17769097 aggacaatagtataattgtacaaccactacctccactatt 17769136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 19070398 - 19070437
Alignment:
Q  190 aggacaatagtacaattgtacaaccactatctccactatt 229  Q
    |||||||||||| |||||||||||||||| ||||||||||    
T  19070398 aggacaatagtataattgtacaaccactacctccactatt 19070437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 227
Target Start/End: Complemental strand, 21317527 - 21317404
Alignment:
Q  102 attgcagaag-aatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaatagt 200  Q
    |||||||||| |||||||||||| ||||||| ||| || ||| ||||  | |||| ||||||||||||| || || ||| ||  |||| |||||| || |    
T  21317527 attgcagaaggaatagaagcctagagcaacgactattttagatgaattat-aaggcatttgatgcttatcctctgaagagcgcaggaaaaggaca-taat 21317430  T
Q  201 acaattgtacaaccactatctccacta 227  Q
    |||||||||||||||||| ||||||||    
T  21317429 acaattgtacaaccacta-ctccacta 21317404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 218
Target Start/End: Complemental strand, 11513886 - 11513858
Alignment:
Q  190 aggacaatagtacaattgtacaaccacta 218  Q
    |||||||||||||||||||||||||||||    
T  11513886 aggacaatagtacaattgtacaaccacta 11513858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 227
Target Start/End: Original strand, 12388941 - 12389017
Alignment:
Q  152 aaggtatttgatgcttattctttggagaacgttggaagaggacaatagtac-aattgtacaaccactatctccacta 227  Q
    |||| ||| ||||||| ||||||| ||| |||||| | |||||||| |||| || ||||||||||||| ||||||||    
T  12388941 aaggcattggatgcttcttctttgaagagcgttggcaaaggacaattgtacgaagtgtacaaccactacctccacta 12389017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 218
Target Start/End: Complemental strand, 27851590 - 27851562
Alignment:
Q  190 aggacaatagtacaattgtacaaccacta 218  Q
    |||||||||||||||||||||||||||||    
T  27851590 aggacaatagtacaattgtacaaccacta 27851562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 5e-66; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 32 - 227
Target Start/End: Complemental strand, 17927999 - 17927804
Alignment:
Q  32 tgaagatcatcagaagccagaagactggaagcttcaaaagtggttaaatgttgttattatcaagcttatcattgcagaagaatagaagcctaaagcaacg 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||| ||||||||    
T  17927999 tgaagatcatcagaagccagaagactggaagcttcaaaagtggttaaatgttgttattatcacgcctatcattgcagaagaatggaagcctgaagcaacg 17927900  T
Q  132 gctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaatagtacaattgtacaaccactatctccacta 227  Q
    ||||||||| | |||| ||||||| ||| |||||||||||||||||||| ||||||| || | |||||||||  |||||||| | |||||||||||    
T  17927899 gctaattcaaaagaattttgaaggcattggatgcttattctttggagaatgttggaaaagaagaatagtacatgtgtacaacaaatatctccacta 17927804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 98 - 227
Target Start/End: Complemental strand, 25930617 - 25930488
Alignment:
Q  98 tatcattgcagaag-aatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaa 196  Q
    |||||||||||||| |||||||||||  ||||||||||||||||||||||| ||||||  ||| ||||||||||| ||| ||| |||||||| |||| ||    
T  25930617 tatcattgcagaaggaatagaagcctggagcaacggctaattcagaggaat-ttgaagtcattggatgcttattccttgaagagcgttggaaaaggataa 25930519  T
Q  197 tagtacaattgtacaaccactatctccacta 227  Q
    |||||||||||||||||||||||||||||||    
T  25930518 tagtacaattgtacaaccactatctccacta 25930488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 56 - 227
Target Start/End: Complemental strand, 23298132 - 23297961
Alignment:
Q  56 ctggaagcttcaaaagtggttaaatgttgttattatcaagcttatcattgcagaag-aatagaagcctaaagcaacggctaattcagaggaatgttgaag 154  Q
    |||||||||| |||  | |||||||||||||||||| | || |||||||||||||| |||| ||| ||  ||||| ||||| |||| |||||| | ||||    
T  23298132 ctggaagctttaaagtttgttaaatgttgttattattatgcctatcattgcagaaggaataaaagtctggagcaatggctatttcataggaat-tggaag 23298034  T
Q  155 gtatttgatgcttattctttggagaacgttggaagaggacaatagtacaattgtacaaccactatctccacta 227  Q
      ||||||| |||||||||||| ||| ||||||| |||||||||||||||||||||||| |||||||||||||    
T  23298033 acatttgattcttattctttggggaatgttggaaaaggacaatagtacaattgtacaactactatctccacta 23297961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 77 - 227
Target Start/End: Complemental strand, 19625972 - 19625823
Alignment:
Q  77 aaatgttgttattatcaagcttatcattgcagaagaatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttgg 176  Q
    |||||||||||||||||||| |||||||| | |||||| ||||| |  |||||||||||  | |||||||| ||||||| |||  |||||||||   |||    
T  19625972 aaatgttgttattatcaagcctatcattgtataagaatggaagcttggagcaacggctatattagaggaat-ttgaaggcattgaatgcttatttcatgg 19625874  T
Q  177 agaacgttggaagaggacaatagtacaattgtacaaccactatctccacta 227  Q
    |||||||||||| ||||||||||||||| ||||||||||||| ||||||||    
T  19625873 agaacgttggaaaaggacaatagtacaagtgtacaaccactacctccacta 19625823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 32 - 227
Target Start/End: Complemental strand, 12348304 - 12348108
Alignment:
Q  32 tgaagatcatcagaagccagaagactggaagcttcaaaagtggttaaatgttgttattatcaagcttatcattgcagaag-aatagaagcctaaagcaac 130  Q
    ||||||||||||||||| |||||| | |||||||||| | | || ||    | ||||||||| || |||||||||| ||| |||||||||||  |||||     
T  12348304 tgaagatcatcagaagctagaagaatagaagcttcaatatttgtcaagacctattattatcatgcctatcattgcaaaaggaatagaagcctggagcaat 12348205  T
Q  131 ggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagag-gacaatagtacaattgtacaaccactatctccacta 227  Q
    |||||||||| |||||| ||||||  ||| ||||||||| | ||| |||||||||||| |  ||||||| ||||||||||||||||||||||||||||    
T  12348204 ggctaattcataggaat-ttgaagtcattggatgcttatcccttgaagaacgttggaaaaatgacaataatacaattgtacaaccactatctccacta 12348108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 38 - 217
Target Start/End: Complemental strand, 21035197 - 21035019
Alignment:
Q  38 tcatcagaagccagaagactggaagcttcaaaagtggttaaatgttgttattatcaagcttatcattgcagaa-gaatagaagcctaaagcaacggctaa 136  Q
    |||||||||||  |||| |||||||||||| |  | |||||||||||||||| ||| |||||| ||||||||| |||| ||||| |  ||||||| ||||    
T  21035197 tcatcagaagct-gaaggctggaagcttcagagtttgttaaatgttgttattctcatgcttatgattgcagaaggaatggaagcttggagcaacgactaa 21035099  T
Q  137 ttcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaatagtacaattgtacaaccact 217  Q
    |||| |||||| ||||| | ||| |||||||||||  |  ||||||  |||| |||  || ||||||||||||||||||||    
T  21035098 ttcataggaat-ttgaaagcattggatgcttattcactaaagaacgcaggaaaagggtaacagtacaattgtacaaccact 21035019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 32335987 - 32335843
Alignment:
Q  74 gttaaatgttgttattatcaagcttatcattgcagaag-aatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattct 172  Q
    ||||||||||| |||| | | |||||| |||||||||| ||| |||||||  ||||||| ||| |||||| |||| ||||||| ||| ||||||||| |     
T  32335987 gttaaatgttgatattctaatgcttatgattgcagaaggaatggaagcctggagcaacgactatttcagaagaat-ttgaagggattagatgcttatcca 32335889  T
Q  173 ttggagaacgttggaagaggacaatagtacaattgtacaaccacta 218  Q
     || ||| |  ||||| ||||| |||||||||||||||||||||||    
T  32335888 ctgaagagctctggaataggacgatagtacaattgtacaaccacta 32335843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 111 - 227
Target Start/End: Complemental strand, 7812140 - 7812025
Alignment:
Q  111 gaatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaatagtacaattgtac 210  Q
    |||||||||| |  ||||||| ||||||||||||||| || |||| ||| |||||||||||   | |||   || ||| |||||||| ||||||||||||    
T  7812140 gaatagaagctttgagcaacgactaattcagaggaat-ttaaaggcattggatgcttattcaccgaagaggattagaaaaggacaatggtacaattgtac 7812042  T
Q  211 aaccactatctccacta 227  Q
    |||||||||||||||||    
T  7812041 aaccactatctccacta 7812025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 99 - 218
Target Start/End: Original strand, 16462658 - 16462776
Alignment:
Q  99 atcattgcagaag-aatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaat 197  Q
    |||||| |||||| |||||||||||  || ||||||||| |||||||||| ||||||| ||| ||||||||| |  |||||| ||  |||| |||||| |    
T  16462658 atcattacagaaggaatagaagcctggagaaacggctaaatcagaggaat-ttgaaggcattggatgcttatccactggagagcgcaggaaaaggaca-t 16462755  T
Q  198 agtacaattgtacaaccacta 218  Q
    |||||||||||||||||||||    
T  16462756 agtacaattgtacaaccacta 16462776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 227
Target Start/End: Complemental strand, 25592667 - 25592632
Alignment:
Q  192 gacaatagtacaattgtacaaccactatctccacta 227  Q
    ||||||||||||||||||||||||||||||||||||    
T  25592667 gacaatagtacaattgtacaaccactatctccacta 25592632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 30451476 - 30451533
Alignment:
Q  32 tgaagatcatcagaagccagaagactggaagcttcaaaagtggttaaatgttgttatt 89  Q
    |||||||||||||||||  ||||| |||||||||||||  | ||||||||||||||||    
T  30451476 tgaagatcatcagaagctggaagattggaagcttcaaagtttgttaaatgttgttatt 30451533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 227
Target Start/End: Original strand, 10640426 - 10640553
Alignment:
Q  101 cattgcagaagaatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaaga-ggacaatag 199  Q
    ||||||||||||  |||||  | |||||||| |||||||| | | || ||||||| ||| ||||||| ||||||| ||| ||||| || | ||||||| |    
T  10640426 cattgcagaagaccagaagagtgaagcaacgactaattcaaaaggat-ttgaaggcattagatgcttgttctttgaagagcgttgaaaaaaggacaattg 10640524  T
Q  200 tac-aattgtacaaccactatctccacta 227  Q
    ||| || ||||||||||||| ||||||||    
T  10640525 tacgaagtgtacaaccactacctccacta 10640553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 218
Target Start/End: Original strand, 18026866 - 18026894
Alignment:
Q  190 aggacaatagtacaattgtacaaccacta 218  Q
    |||||||||||||||||||||||||||||    
T  18026866 aggacaatagtacaattgtacaaccacta 18026894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 32 - 230
Target Start/End: Complemental strand, 78606 - 78407
Alignment:
Q  32 tgaagatcatcagaagccagaagactggaagcttcaaaagtggttaaatgttgttattatcaagcttatcattgcagaagaatagaagcctaaagcaacg 131  Q
    ||||||||||||||||| ||||||||  |||||||||||||||||||||| ||||||||||| || ||||||||| ||||||||||||| |   ||||||    
T  78606 tgaagatcatcagaagctagaagactataagcttcaaaagtggttaaatgctgttattatcacgcctatcattgctgaagaatagaagcttggggcaacg 78507  T
Q  132 gctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgtt-ggaagaggacaatagtacaattgtacaaccactatctccactattt 230  Q
    |||||||||||||||| ||||||| ||| |||| ||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  78506 gctaattcagaggaattttgaaggcattggatgtttattctttagagaacgttgggaaaaggacaatagtacaattgtacaaccactatctccactattt 78407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 16607698 - 16607523
Alignment:
Q  53 agactggaagcttcaaaag--tggttaaatgttgttattatcaagcttatcattgcagaagaatagaagcctaaagcaacggctaattcagaggaatgtt 150  Q
    |||||||||||||||||||  || |  ||||||||||||||||  |||||||||||||||||||||||||||  ||||||||||||||||||||||| ||    
T  16607698 agactggaagcttcaaaagattgttctaatgttgttattatcacacttatcattgcagaagaatagaagcctggagcaacggctaattcagaggaat-tt 16607600  T
Q  151 gaaggtatttgatgcttattctttggagaacgttggaagaggacaatagtacaattgtacaaccactatctccacta 227  Q
    ||||| ||| || ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  16607599 gaaggcattggaagcttattctttggagaacgttggaaaaggacaatagtacaagtgtacaaccactatctccacta 16607523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 99 - 228
Target Start/End: Original strand, 31589017 - 31589144
Alignment:
Q  99 atcattgcagaag-aatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaat 197  Q
    ||||||||||||| |||||||||||  |||||| |||||||||||||||| |  |||| ||| ||||| ||| |  || ||||||  |||| ||||| ||    
T  31589017 atcattgcagaaggaatagaagcctggagcaacagctaattcagaggaat-taaaaggcattggatgcgtatccactgaagaacgcaggaaaaggac-at 31589114  T
Q  198 agtacaattgtacaaccactatctccactat 228  Q
    ||||||||||||||||||||| |||||||||    
T  31589115 agtacaattgtacaaccacta-ctccactat 31589144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 20567965 - 20567821
Alignment:
Q  74 gttaaatgttgttattatcaagcttatcattgcagaag-aatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattct 172  Q
    |||||||||||||||| | | |||||| |||||||||| |||  || |||  ||||||| ||| ||||||||||| ||||||| ||| |||||||||       
T  20567965 gttaaatgttgttattctaatgcttatgattgcagaaggaatgcaatcctggagcaacgactacttcagaggaat-ttgaaggcattggatgcttatcga 20567867  T
Q  173 ttggagaacgttggaagaggacaatagtacaattgtacaaccacta 218  Q
     ||  || || | ||| |||||||||||||||||||||||||||||    
T  20567866 ctgatgagcgctagaaaaggacaatagtacaattgtacaaccacta 20567821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 2152988 - 2153038
Alignment:
Q  177 agaacgttggaagaggacaatagtacaattgtacaaccactatctccacta 227  Q
    |||||||| ||| |||||||||||| | |||||||||||||||||||||||    
T  2152988 agaacgttagaaaaggacaatagtatagttgtacaaccactatctccacta 2153038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 218
Target Start/End: Original strand, 17262750 - 17262856
Alignment:
Q  111 gaatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaatagtacaattgtac 210  Q
    ||||||||||||  ||||| | ||| ||||||||||||  ||||| ||| ||||||||| |  || ||| ||  || | |||||||||||||||||||||    
T  17262750 gaatagaagcctggagcaatgactatttcagaggaatga-gaaggcattggatgcttatccactgaagagcgcaggtaaaggacaatagtacaattgtac 17262848  T
Q  211 aaccacta 218  Q
    ||||||||    
T  17262849 aaccacta 17262856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 27276241 - 27276277
Alignment:
Q  190 aggacaatagtacaattgtacaaccactatctccacta 227  Q
    |||||||||||||||||||||||||||| |||||||||    
T  27276241 aggacaatagtacaattgtacaaccact-tctccacta 27276277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 31674 - 31880
Alignment:
Q  19 tcatcagaggttatgaagatcatcagaagccagaagactggaagcttcaaaagtggtt-aaatgttgttattatcaagcttatcattgcagaagaataga 117  Q
    |||||||||||| ||||||||||||||||| |||||| ||||||||| ||| || ||| ||||||| |||  |||| || |||||||||||||| |||||    
T  31674 tcatcagaggttctgaagatcatcagaagctagaagaatggaagctttaaatgttgttcaaatgtt-tta--atcacgcctatcattgcagaagtataga 31770  T
Q  118 agcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaatagtacaattgtacaaccact 217  Q
    ||||| | |||||||||||||||||||||| | ||| | ||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  31771 agcctgatgcaacggctaattcagaggaatttggaaagcattggatgcttattctttggagaacgttggaaaaggacaatagtacaagtgtacaaccact 31870  T
Q  218 atctccacta 227  Q
    | ||||||||    
T  31871 acctccacta 31880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 6e-53; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 51 - 227
Target Start/End: Original strand, 10661092 - 10661269
Alignment:
Q  51 gaagactggaagcttcaaaag-tggttaaatgttgttattatcaagcttatcattgcagaagaatagaagcctaaagcaacggctaattcagaggaatgt 149  Q
    |||||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||||  |||||||||| |||||||| |||| |||||||| | |    
T  10661092 gaagactgaaagcttcaaaaggttgttaaatgttgttattatcaagcctatcattgcagaaatatagaagcctgaagcaacgactaaatcagaggatttt 10661191  T
Q  150 tgaaggtatttgatgcttattctttggagaacgttggaagaggacaatagtacaattgtacaaccactatctccacta 227  Q
    |||||| |||  ||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  10661192 tgaaggcattgaatgcttattatttggagaatgttggaaaaggacaatagtacaattgtacaaccactatctccacta 10661269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 51 - 227
Target Start/End: Original strand, 10875237 - 10875414
Alignment:
Q  51 gaagactggaagcttcaaaag-tggttaaatgttgttattatcaagcttatcattgcagaagaatagaagcctaaagcaacggctaattcagaggaatgt 149  Q
    |||||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||||  |||||||||| |||||||| |||| |||||||| | |    
T  10875237 gaagactgaaagcttcaaaaggttgttaaatgttgttattatcaagcctatcattgcagaaatatagaagcctgaagcaacgactaaatcagaggatttt 10875336  T
Q  150 tgaaggtatttgatgcttattctttggagaacgttggaagaggacaatagtacaattgtacaaccactatctccacta 227  Q
    |||||| |||  ||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  10875337 tgaaggcattgaatgcttattatttggagaatgttggaaaaggacaatagtacaattgtacaaccactatctccacta 10875414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 52 - 227
Target Start/End: Complemental strand, 10249996 - 10249821
Alignment:
Q  52 aagactggaagcttcaaaagtggttaaatgttgttattatcaagcttatcattgcagaag-aatagaagcctaaagcaacggctaattcagaggaatgtt 150  Q
    ||||||||||||||||| | | || ||  ||||||||||||| || |||||||||||||| |||||||| ||| ||||||  |||||| |||||||| ||    
T  10249996 aagactggaagcttcaatatttgtcaagagttgttattatcatgcctatcattgcagaaggaatagaagtctagagcaacaactaattaagaggaat-tt 10249898  T
Q  151 gaaggtatttgatgcttattctttggagaacgttggaagaggacaatagtacaattgtacaaccactatctccacta 227  Q
    ||||  ||| ||||||||| | ||| ||||| |||||| |||||||||||||||||||||||||||  |||||||||    
T  10249897 gaagtcattggatgcttatcccttgaagaacattggaaaaggacaatagtacaattgtacaaccaccttctccacta 10249821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 100 - 227
Target Start/End: Complemental strand, 11901323 - 11901196
Alignment:
Q  100 tcattgcagaagaatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaatag 199  Q
    ||||||||||||| ||||| | | |||||||| |||||||| | || | ||||||| ||| |||||||||||| ||||||||||| ||| |||||||| |    
T  11901323 tcattgcagaagactagaaacatgaagcaacgactaattcaaaagatt-ttgaaggcattggatgcttattctctggagaacgttagaaaaggacaattg 11901225  T
Q  200 tac-aattgtacaaccactatctccacta 227  Q
    ||| || ||||||| |||||||| |||||    
T  11901224 tacgaagtgtacaatcactatctacacta 11901196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 152 - 227
Target Start/End: Original strand, 17788072 - 17788149
Alignment:
Q  152 aaggtatttgatgcttattctttggagaacgttgg-aagaggacaatagtacaat-tgtacaaccactatctccacta 227  Q
    |||| ||| |||||||||||||||||||||||||| || |||||||| |||| || ||||||||||||||||||||||    
T  17788072 aaggcattagatgcttattctttggagaacgttggaaaaaggacaattgtacgatgtgtacaaccactatctccacta 17788149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 216
Target Start/End: Complemental strand, 11915837 - 11915720
Alignment:
Q  99 atcattgcagaagaatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaata 198  Q
    |||||||||||||| || |||  | |||||||| ||| |||| | | || ||||||| ||| ||||||||||||||| ||| |||||||| ||||||||     
T  11915837 atcattgcagaagactaaaagagtgaagcaacgactatttcaaatggat-ttgaaggcattggatgcttattctttgaagagcgttggaaaaggacaatt 11915739  T
Q  199 gtac-aattgtacaaccac 216  Q
    |||| || |||||||||||    
T  11915738 gtacaaagtgtacaaccac 11915720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 227
Target Start/End: Complemental strand, 13027939 - 13027786
Alignment:
Q  74 gttaaatgttgttattatcaa-gcttatcattgcagaag-aatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattc 171  Q
    |||||||||| ||||| | || || |||||||||||||| ||| |||||||  ||||||||||| ||||||||||| | ||||| ||| ||||||||| |    
T  13027939 gttaaatgtttttattctgaatgcatatcattgcagaaggaatggaagcctggagcaacggctatttcagaggaat-tagaaggcattggatgcttatcc 13027841  T
Q  172 tttggagaacgttggaagaggacaatagtacaattgtacaaccactatctccacta 227  Q
      || ||| ||  |||| | ||| ||| |||||||||||| |||||| ||||||||    
T  13027840 actgaagagcgcaggaaaatgac-atattacaattgtacagccactacctccacta 13027786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 29986 - 29806
Alignment:
Q  51 gaagactggaagcttcaaaag--tggttaaatgttgttattatcaagcttatcattgcagaagaatagaagcctaaagcaacggctaattcagaggaatg 148  Q
    ||||||||||||||| |||||  || | ||||||||||||||||| || |||||||||||||||||||||||||  ||||||| |||||||||| ||||     
T  29986 gaagactggaagctttaaaagattgttcaaatgttgttattatcacgcctatcattgcagaagaatagaagcctggagcaacgactaattcagatgaat- 29888  T
Q  149 ttgaaggtatttgatgcttattctttggagaacgttggaagaggacaatagtacaattgtacaaccactatctccactattt 230  Q
    | ||||| ||| |||||||||||||||||||||||| ||| ||||||||||||||| || ||||||||||||||||||||||    
T  29887 tggaaggcattggatgcttattctttggagaacgttcgaaaaggacaatagtacaagtggacaaccactatctccactattt 29806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 80 - 227
Target Start/End: Complemental strand, 18772773 - 18772627
Alignment:
Q  80 tgttgttattatcaagcttatcattgcagaagaatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggaga 179  Q
    ||||||||||||||| | |||||||| |||||||| || ||||  ||||||| |||| |||||||||| ||||||| ||| |||||||||||||||||||    
T  18772773 tgttgttattatcaaacctatcattgtagaagaatggatgcctggagcaacgactaaatcagaggaat-ttgaaggcattggatgcttattctttggaga 18772675  T
Q  180 acgttggaagaggacaatagtacaattgtacaaccactatctccacta 227  Q
    ||||||||| ||||||||||||||| |||||||||| || ||||||||    
T  18772674 acgttggaaaaggacaatagtacaaatgtacaaccattacctccacta 18772627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 98 - 227
Target Start/End: Complemental strand, 26833173 - 26833043
Alignment:
Q  98 tatcattgcagaagaatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttgg-aagaggacaa 196  Q
    |||||||||||||| |||||||| | | |||||||||||||||||||||| | ||| | ||| || ||||||||||||||||||||||| || |||||||    
T  26833173 tatcattgcagaagtatagaagcttgatgcaacggctaattcagaggaatttggaaagcattcgaagcttattctttggagaacgttggaaaaaggacaa 26833074  T
Q  197 tagtacaattgtacaaccactatctccacta 227  Q
    ||||| || ||||||||||||| ||||||||    
T  26833073 tagtataagtgtacaaccactacctccacta 26833043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 98 - 227
Target Start/End: Original strand, 22461653 - 22461782
Alignment:
Q  98 tatcattgcagaagaatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaat 197  Q
    ||||||||||||||| ||||||  | |||||||| |||||||| | | || ||||||| ||| ||||||||||| |||||||  |||| || ||||||||    
T  22461653 tatcattgcagaagactagaagaatgaagcaacgactaattcaaatggat-ttgaaggcattggatgcttattcgttggagagagttgaaaaaggacaat 22461751  T
Q  198 agtac-aattgtacaaccactatctccacta 227  Q
     ||||  | || |||||||||||||||||||    
T  22461752 tgtacggagtgcacaaccactatctccacta 22461782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 17688026 - 17687989
Alignment:
Q  190 aggacaatagtacaattgtacaaccactatctccacta 227  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  17688026 aggacaatagtacaattgtacaaccactacctccacta 17687989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 229
Target Start/End: Complemental strand, 18558058 - 18558025
Alignment:
Q  196 atagtacaattgtacaaccactatctccactatt 229  Q
    |||||||||||||||||||| |||||||||||||    
T  18558058 atagtacaattgtacaaccaatatctccactatt 18558025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 19505549 - 19505585
Alignment:
Q  190 aggacaatagtacaattgtacaaccactatctccacta 227  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  19505549 aggacaatagtacaattgtacaaccacta-ctccacta 19505585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 8e-37; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 77 - 227
Target Start/End: Complemental strand, 17018741 - 17018592
Alignment:
Q  77 aaatgttgttattatcaagcttatcattgcagaagaatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttgg 176  Q
    ||||||||||||||||| || ||||||||||||||||||||||| |  ||||||  ||| ||||||||||| | ||| | ||| ||||||||||||||||    
T  17018741 aaatgttgttattatcacgcctatcattgcagaagaatagaagcttggagcaacaactacttcagaggaat-tggaaagcattggatgcttattctttgg 17018643  T
Q  177 agaacgttggaagaggacaatagtacaattgtacaaccactatctccacta 227  Q
    |||||||||||| ||||||||||| ||| |||||||||||||||| |||||    
T  17018642 agaacgttggaaaaggacaatagtgcaagtgtacaaccactatcttcacta 17018592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 18896452 - 18896663
Alignment:
Q  15 gacatcatcagaggttatgaagatcatcagaagccagaagactggaagcttcaaaag-tggttaaatgttgttattatcaagcttatcattgcagaagaa 113  Q
    |||||||||||| ||| |||||||| ||||||||   |||  | |||| |||||||| || ||||||| |||||  |||| || |||||||||||||||     
T  18896452 gacatcatcagaagttctgaagatcttcagaagctgaaaggattgaagtttcaaaagatgtttaaatgatgtta--atcacgcctatcattgcagaagac 18896549  T
Q  114 tagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaatagtac-aattgtacaa 212  Q
    |||||||   ||||||||||||||||| | |||| ||||||| ||| |||||||| ||||||||||||||||||| |||||| | |||| || |||||||    
T  18896550 tagaagcaagaagcaacggctaattcaaaagaat-ttgaaggcattggatgcttagtctttggagaacgttggaaaaggacagttgtacgaagtgtacaa 18896648  T
Q  213 ccactatctccacta 227  Q
    |||||| ||||||||    
T  18896649 ccactacctccacta 18896663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 32 - 227
Target Start/End: Complemental strand, 20909615 - 20909420
Alignment:
Q  32 tgaagatcatcagaagccagaagactggaagcttcaaaagtggttaaatgttgttattatcaagcttatcattgcagaag-aatagaagcctaaagcaac 130  Q
    |||||||||||| ||||  ||||||| |||||||||||  | |||||  ||||||||| |   || |||||||| ||||| |||||||||||  ||||||    
T  20909615 tgaagatcatcaaaagctggaagactagaagcttcaaagtttgttaatagttgttattgttttgcctatcattgtagaaggaatagaagcctggagcaac 20909516  T
Q  131 ggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaatagtacaattgtacaaccactatctccacta 227  Q
    | | | ||||||||| | | ||||  ||| ||||||||||||| | ||| |||||||| |||||||||||||| || ||||||||||||||||||||    
T  20909515 gacgatttcagaggatt-tggaagacattagatgcttattcttggcagagcgttggaaaaggacaatagtacatttctacaaccactatctccacta 20909420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 83 - 204
Target Start/End: Complemental strand, 18615046 - 18614929
Alignment:
Q  83 tgttattatcaagcttatcattgcagaagaatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacg 182  Q
    ||||||||||| || ||||||| ||||||||    ||| |||||||| | |||||||| || ||| ||||||| |||  |||||||| ||||||||||||    
T  18615046 tgttattatcacgcctatcattacagaagaa----agcttaaagcaatgactaattcaaagaaattttgaaggcattgtatgcttatactttggagaacg 18614951  T
Q  183 ttggaagaggacaatagtacaa 204  Q
    |||||| |||||||||||||||    
T  18614950 ttggaaaaggacaatagtacaa 18614929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 227
Target Start/End: Original strand, 21191805 - 21191931
Alignment:
Q  101 cattgcagaagaatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaatagt 200  Q
    ||||||||||||  |||||  | ||||||| ||||||||| | | || ||||||| ||| ||||||| ||||||| ||| |||||| | || ||||| ||    
T  21191805 cattgcagaagaccagaagagtgaagcaacagctaattcaaaaggat-ttgaaggcattggatgcttgttctttgaagagcgttggcaaagtacaattgt 21191903  T
Q  201 ac-aattgtacaaccactatctccacta 227  Q
    || || ||||||||||||| ||||||||    
T  21191904 acgaagtgtacaaccactacctccacta 21191931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 20109983 - 20110016
Alignment:
Q  196 atagtacaattgtacaaccactatctccactatt 229  Q
    ||||||||||||||||||||| ||||||||||||    
T  20109983 atagtacaattgtacaaccaccatctccactatt 20110016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 227
Target Start/End: Complemental strand, 23054507 - 23054380
Alignment:
Q  99 atcattgcagaag-aatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaat 197  Q
    ||||||||||||| |||||||||||  ||||||| ||| ||||||| ||| | ||||| ||| |||| |||| |  || ||| ||  |||| ||||| ||    
T  23054507 atcattgcagaaggaatagaagcctggagcaacgactatttcagagaaat-tagaaggcattggatgtttatccaatgaagagcgcaggaaaaggac-at 23054410  T
Q  198 agtacaattgtacaaccactatctccacta 227  Q
    ||||||||||||||||||||| || |||||    
T  23054409 agtacaattgtacaaccactaccttcacta 23054380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 218
Target Start/End: Complemental strand, 8698893 - 8698865
Alignment:
Q  190 aggacaatagtacaattgtacaaccacta 218  Q
    |||||||||||||||||||||||||||||    
T  8698893 aggacaatagtacaattgtacaaccacta 8698865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 52 - 227
Target Start/End: Complemental strand, 891 - 715
Alignment:
Q  52 aagactggaagcttcaaaagtggttaaatgttgttattatcaagcttatcattgcagaag-aata-gaagcctaaagcaacggctaattcagaggaatgt 149  Q
    |||||| |||||||||| | | || ||  ||||||||||||| || |||||||||||||| |||| |||||||  ||||||| ||| ||||||| ||| |    
T  891 aagactagaagcttcaatatttgtcaagagttgttattatcatgcctatcattgcagaaggaataagaagcctggagcaacgactatttcagagaaat-t 793  T
Q  150 tgaaggtatttgatgcttattctttggagaacgttggaagaggacaatagtacaattgtacaaccactatctccacta 227  Q
      |||| ||| ||||||||||||||| ||| |||| ||| |||||||||||||||||||||||||| |||||||||||    
T  792 gaaaggcattggatgcttattctttgaagagcgttcgaaaaggacaatagtacaattgtacaaccattatctccacta 715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 52 - 227
Target Start/End: Complemental strand, 16412179 - 16412003
Alignment:
Q  52 aagactggaagcttcaaaagtggttaaatgttgttattatcaagcttatcattgcagaag-aata-gaagcctaaagcaacggctaattcagaggaatgt 149  Q
    |||||| |||||||||| | | || ||  ||||||||||||| || |||||||||||||| |||| |||||||  ||||||| ||| ||||||| ||| |    
T  16412179 aagactagaagcttcaatatttgtcaagagttgttattatcatgcctatcattgcagaaggaataagaagcctggagcaacgactatttcagagaaat-t 16412081  T
Q  150 tgaaggtatttgatgcttattctttggagaacgttggaagaggacaatagtacaattgtacaaccactatctccacta 227  Q
      |||| ||| ||||||||||||||| ||| |||| ||| |||||||||||||||||||||||||| |||||||||||    
T  16412080 gaaaggcattggatgcttattctttgaagagcgttcgaaaaggacaatagtacaattgtacaaccattatctccacta 16412003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 13880194 - 13880115
Alignment:
Q  149 ttgaaggtatttgatgcttattctttggagaacgttggaagaggacaatagtac-aattgtacaaccactatctccacta 227  Q
    ||||||| ||| ||||||||||||||| ||| |||||  | || ||||| |||| || ||||||||||||||||||||||    
T  13880194 ttgaaggcattagatgcttattctttgaagagcgttgacaaagtacaattgtacgaagtgtacaaccactatctccacta 13880115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 18361692 - 18361729
Alignment:
Q  190 aggacaatagtacaattgtacaaccactatctccactat 228  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  18361692 aggacaatagtacaattgtacaaccactat-tccactat 18361729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 7488015 - 7488052
Alignment:
Q  190 aggacaatagtacaattgtacaaccactatctccacta 227  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  7488015 aggaaaatagtacaactgtacaaccactatctccacta 7488052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 218
Target Start/End: Original strand, 15871207 - 15871235
Alignment:
Q  190 aggacaatagtacaattgtacaaccacta 218  Q
    |||||||||||||||||||||||||||||    
T  15871207 aggacaatagtacaattgtacaaccacta 15871235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 32 - 220
Target Start/End: Complemental strand, 24844337 - 24844149
Alignment:
Q  32 tgaagatcatcagaagccagaagactggaagcttcaaaagtggttaaatgttgttattatcaagcttatcattgcagaa-gaatagaagcctaaagcaac 130  Q
    |||||||||||||||||   |||||||||||||||||   | || ||    |||||  |||| || ||||||||||||| ||||||||||||  ||||||    
T  24844337 tgaagatcatcagaagctgaaagactggaagcttcaatgtttgtaaagatatgttaaaatcatgcctatcattgcagaaagaatagaagcctggagcaac 24844238  T
Q  131 ggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaatagtacaattgtacaaccactatc 220  Q
    | ||| ||||||||| | | ||||| ||| ||||| ||||||||||||| | |||||| |||||||||||||||||||||||||||||||    
T  24844237 gactatttcagaggagt-tggaaggcattggatgcctattctttggagagccttggaaaaggacaatagtacaattgtacaaccactatc 24844149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 98 - 227
Target Start/End: Original strand, 18430902 - 18431031
Alignment:
Q  98 tatcattgcagaagaatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaat 197  Q
    ||||||||||||||| ||||||| | ||||||||||||||||| | |||| ||||||| |||  |||||||||||||||| |||||||||| | ||||||    
T  18430902 tatcattgcagaagactagaagcatgaagcaacggctaattcaaaagaat-ttgaaggcattgaatgcttattctttggaaaacgttggaaaacgacaat 18431000  T
Q  198 agtac-aattgtacaaccactatctccacta 227  Q
    ||||| || ||||||||||| | ||||||||    
T  18431001 agtacgaagtgtacaaccacgacctccacta 18431031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 26618982 - 26619192
Alignment:
Q  15 gacatcatcagaggttatgaagatcatcagaagccagaagactggaagcttcaaaagtggtt-aaatgttgttattatcaagcttatcattgcagaagaa 113  Q
    |||||||||||| ||| ||||||||| |||||||   |||| | ||||||||||| || ||| ||||| | |||  |||| || |||||||||||||||     
T  26618982 gacatcatcagaagttctgaagatcaacagaagctgaaagaattgaagcttcaaaggttgttcaaatgat-tta--atcacgcctatcattgcagaagac 26619078  T
Q  114 tagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaatagtac-aattgtacaa 212  Q
    | ||||  | |||||||  ||| |||| | |||| ||||||| |||  |||||||||||||||||||||||| || |||||||| |||| || |||||||    
T  26619079 tggaagaatgaagcaacaactatttcaaaagaat-ttgaaggcattgaatgcttattctttggagaacgttgaaaaaggacaattgtacgaagtgtacaa 26619177  T
Q  213 ccactatctccacta 227  Q
    |||||||||||||||    
T  26619178 ccactatctccacta 26619192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 109 - 227
Target Start/End: Original strand, 10896406 - 10896523
Alignment:
Q  109 aagaatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaatagtacaattgt 208  Q
    |||||||||| |||  ||||||||||| |||||| |||| | ||||| ||| |||||||||||   | ||| |||| ||| |||||||||||||||||||    
T  10896406 aagaatagaatcctggagcaacggctatttcagaagaat-tagaaggcattggatgcttattcgccgaagagcgttagaaaaggacaatagtacaattgt 10896504  T
Q  209 acaaccactatctccacta 227  Q
    |||||||||||||||||||    
T  10896505 acaaccactatctccacta 10896523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 98 - 227
Target Start/End: Complemental strand, 18702876 - 18702747
Alignment:
Q  98 tatcattgcagaagaatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaat 197  Q
    ||||||| ||||||| ||||||| | ||| ||||||||||||| | |||| ||||||| ||| |||||||| ||||||||||||||||||| ||||||||    
T  18702876 tatcattacagaagactagaagcatgaagtaacggctaattcaaaagaat-ttgaaggcattagatgcttactctttggagaacgttggaaaaggacaat 18702778  T
Q  198 agtac-aattgtacaaccactatctccacta 227  Q
     |||| || | | |||| |||||||||||||    
T  18702777 tgtacgaagtatgcaacaactatctccacta 18702747  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 227
Target Start/End: Complemental strand, 20568272 - 20568144
Alignment:
Q  99 atcattgcagaag-aatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaat 197  Q
    ||||||| ||||| |||||||||||  ||||||||||| || | |||||| | ||||| ||| ||||||||| |  |  ||| |  ||||| ||||||||    
T  20568272 atcattgtagaaggaatagaagcctggagcaacggctattttataggaat-tagaaggcattggatgcttatccgctaaagagcaatggaaaaggacaat 20568174  T
Q  198 agtacaattgtacaaccactatctccacta 227  Q
    ||||||||||||||||||||| ||||||||    
T  20568173 agtacaattgtacaaccactacctccacta 20568144  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 171
Target Start/End: Original strand, 24302880 - 24303000
Alignment:
Q  51 gaagactggaagcttcaaaagtggttaaatgttgttattatcaagcttatcattgcagaa-gaatagaagcctaaagcaacggctaattcagaggaatgt 149  Q
    ||||||||||||| ||| |  | |||||||||||||||| ||| || ||| ||||||||| |||| ||||||   |||||| ||||||| |||||||| |    
T  24302880 gaagactggaagcctcagagtttgttaaatgttgttattctcatgcctatgattgcagaaggaatggaagccaggagcaaccgctaatttagaggaat-t 24302978  T
Q  150 tgaaggtatttgatgcttattc 171  Q
    |||||| ||  |||||||||||    
T  24302979 tgaaggcatgggatgcttattc 24303000  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 218
Target Start/End: Original strand, 22524888 - 22524916
Alignment:
Q  190 aggacaatagtacaattgtacaaccacta 218  Q
    |||||||||||||||||||||||||||||    
T  22524888 aggacaatagtacaattgtacaaccacta 22524916  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 218
Target Start/End: Complemental strand, 25918689 - 25918661
Alignment:
Q  190 aggacaatagtacaattgtacaaccacta 218  Q
    |||||||||||||||||||||||||||||    
T  25918689 aggacaatagtacaattgtacaaccacta 25918661  T

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Target: scaffold0020 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 145010 - 144920
Alignment:
Q  137 ttcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaatagtacaattgtacaaccactatctccacta 227  Q
    ||||||||||| | ||||| ||| ||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||| ||||||||    
T  145010 ttcagaggaatttggaaggcattggatgcttattctttggagaactttggaaaaggacaatagtacaattgtacatccactacctccacta 144920  T

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Target: scaffold0009 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 268997 - 268795
Alignment:
Q  19 tcatcagaggttatgaagatcatcagaagccagaagactggaagcttcaaaagtggttaaa-tgttgttattatcaagcttatcattgcagaagaataga 117  Q
    |||||||||||| ||||| |  |||||||| | ||||||| ||||||||||  | |||||| |||||||||||||| || |||||||||||||||||| |    
T  268997 tcatcagaggttctgaagtt--tcagaagcta-aagactgaaagcttcaaagattgttaaaatgttgttattatcacgcctatcattgcagaagaatata 268901  T
Q  118 agcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaatagtacaattgtacaaccact 217  Q
    |||||  | |||| ||||| ||| || ||| | |||   ||| |||||||   |||||||||| |||||||  ||| |||||||||||||||||||||||    
T  268900 agcctggaacaacagctaactcaaagaaat-tggaaaacattggatgctt---ctttggagaatgttggaaatggataatagtacaattgtacaaccact 268805  T
Q  218 atctccacta 227  Q
    ||||||||||    
T  268804 atctccacta 268795  T

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Target: scaffold0498 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 310 - 408
Alignment:
Q  128 aacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaatagtacaattgtacaaccactatctccacta 227  Q
    ||||||||| | |||||||| ||||||| ||| |||||||||||||||   |||||||||| |||||| |||||||| ||||||||||||| ||||||||    
T  310 aacggctaaataagaggaat-ttgaaggcattggatgcttattctttgttaaacgttggaaaaggacattagtacaagtgtacaaccactacctccacta 408  T

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Target: scaffold0622 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0622
Description:

Target: scaffold0622; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 227
Target Start/End: Complemental strand, 2865 - 2672
Alignment:
Q  34 aagatcatcagaagccagaagactggaagcttcaaaagtggttaaatgttgttattatcaagcttatcattgcagaa-gaatagaagcctaaagcaacgg 132  Q
    ||||||||||||||   |||||| ||||||||||||  |  ||||| | ||||||| |   || ||||||||||||| ||||| ||||||  |||||||     
T  2865 aagatcatcagaagatggaagaccggaagcttcaaagttttttaaaagctgttattgttttgcctatcattgcagaaagaataaaagcctggagcaacga 2766  T
Q  133 ctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaatagtacaattgtacaaccactatctccacta 227  Q
    ||| || |||||||| | ||||| ||| ||| ||||| |||  |||| || ||||| ||||||||| |||| |||||||||||||||||| ||||    
T  2765 ctattttagaggaat-tggaaggcattggatacttatacttgcgagagcggtggaaaaggacaatattacagttgtacaaccactatctctacta 2672  T

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Target: scaffold0273 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 227
Target Start/End: Complemental strand, 5770 - 5642
Alignment:
Q  98 tatcattgcagaagaatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaat 197  Q
    ||||||| ||||||| ||||||  | |||||||| ||| |||| | |||| ||||||| ||| |||||||||||||||||||||||||||| |  |||||    
T  5770 tatcattccagaagactagaagaatgaagcaacgactatttcaaatgaat-ttgaaggcattggatgcttattctttggagaacgttggaa-aatacaat 5673  T
Q  198 agtac-aattgtacaaccactatctccacta 227  Q
     |||| || ||||||||||||| ||||||||    
T  5672 tgtacgaagtgtacaaccactacctccacta 5642  T

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Target: scaffold0758 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 111 - 227
Target Start/End: Complemental strand, 4397 - 4283
Alignment:
Q  111 gaatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaatagtacaattgtac 210  Q
    ||||| ||||||  ||||||| ||| ||||||||||| | ||||| ||||||||||||| |  || ||||||  |||| | |||||||||||||||||||    
T  4397 gaataaaagcctggagcaacgactatttcagaggaat-tagaaggcatttgatgcttatccactgaagaacgcaggaaaatgacaatagtacaattgtac 4299  T
Q  211 aaccactatctccacta 227  Q
    |||||||| ||||||||    
T  4298 aaccacta-ctccacta 4283  T

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Target: scaffold0040 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 1538 - 1617
Alignment:
Q  149 ttgaaggtatttgatgcttattctttggagaacgttggaagaggacaatagtac-aattgtacaaccactatctccacta 227  Q
    ||||||| ||| || | |||||||||| |||||||||||| |||||||| |||| || ||||||||||||||||||||||    
T  1538 ttgaaggcattggacgtttattctttgaagaacgttggaaaaggacaattgtacgaagtgtacaaccactatctccacta 1617  T

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Target: scaffold0388 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 4621 - 4537
Alignment:
Q  38 tcatcagaagccagaagactggaagcttcaaaag-tggttaaatgttgttattatcaagcttatcattgcagaagaatagaagcct 122  Q
    ||||||||||| ||| ||| | || ||||||||| | |||||||| |||||||||||||| ||||||||||||||||| |||||||    
T  4621 tcatcagaagctaga-gaccgaaaacttcaaaaggttgttaaatgctgttattatcaagcctatcattgcagaagaatggaagcct 4537  T

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Target: scaffold0388; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 218
Target Start/End: Complemental strand, 5505 - 5398
Alignment:
Q  111 gaatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttgga-agaggacaatagtacaattgta 209  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||| ||| |||  |||| |  || || |  | ||| | ||||||||||||||||||||    
T  5505 gaatagaagcctggagcaacggctaattcagaggaat-ttgaaggcattggatatttatccagtgaaggagctcggagaaaggacaatagtacaattgta 5407  T
Q  210 caaccacta 218  Q
    |||||||||    
T  5406 caaccacta 5398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0324 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0324
Description:

Target: scaffold0324; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 10074 - 9971
Alignment:
Q  124 aagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaatagtacaat-tgtacaaccactatctc 222  Q
    ||||||||||||||||| | |||| ||||||| ||| ||||||| ||||||| ||| |||||  | || ||||| ||||||  ||||||||||||| |||    
T  10074 aagcaacggctaattcaaatgaat-ttgaaggcattcgatgcttgttctttgaagagcgttgacaaagtacaattgtacaaagtgtacaaccactacctc 9976  T
Q  223 cacta 227  Q
    |||||    
T  9975 cacta 9971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 227
Target Start/End: Complemental strand, 20205 - 20082
Alignment:
Q  102 attgcagaag-aatagaagcctaaagcaacggctaattcagaggaatgttgaaggtatttgatgcttattctttggagaacgttggaagaggacaatagt 200  Q
    |||||||||| ||| |||||||| ||||||| ||| |||||| |||| | ||| | ||| ||||||||| | ||| ||| ||  |||| |||||| ||||    
T  20205 attgcagaaggaatggaagcctagagcaacgactatttcagaagaat-tagaaagcattggatgcttatccattgaagagcgcaggaaaaggaca-tagt 20108  T
Q  201 acaattgtacaaccactatctccacta 227  Q
    ||||||||||||||||| |||||||||    
T  20107 acaattgtacaaccact-tctccacta 20082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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