View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0747_high_1 (Length: 690)
Name: NF0747_high_1
Description: NF0747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0747_high_1 |
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| [»] scaffold0092 (1 HSPs) |
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| [»] scaffold0053 (1 HSPs) |
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Alignment Details
Target: scaffold0092 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: scaffold0092
Description:
Target: scaffold0092; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 30 - 688
Target Start/End: Original strand, 41984 - 42646
Alignment:
| Q |
30 |
atttacatgtaatgaatttgttgatgtgatgtgatattcttgaagctaattgattcaaaaggttttatcctgtcaaacggttaggtcatgtttagccact |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
41984 |
atttacatgtaatgaatttgttgatgtgatgtgatattcttgaagctaattgattcgaaaggttttatcctgtcgaacgcttaggtcatgtttagccact |
42083 |
T |
|
| Q |
130 |
gcttgcaagactattcaatgtttgatgtcatgcctgcacttccatgttactttataatgcttgagtagacttgacaatggtataaaatttgctcaaaagt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42084 |
gcttgcaagactattcaatgtttgatgtcatgcctgcacttccatgttactttataatgcttgagtagacttgacaatggtataaaatttgctcaaaagt |
42183 |
T |
|
| Q |
230 |
gttcctgctttaaggtgcagtgactttggactcagactgcaat-gttctgtttcagttaatatttcatcttcatcgaaaaaagaagtagccgctttctcg |
328 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42184 |
gttcctgctttaaggtgcagtgactttggactcagactgcaattgttctgtttcagttaatatttcatcttcatcgaaaaaagaagtagccgctttcttg |
42283 |
T |
|
| Q |
329 |
aagaaaatctcatctctgcatccaagtctttgtgctgttgatgttgatgtcccacttaacgtcctctgtaaaaatgacgagaagcttgaacaagttttac |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42284 |
aagaaaatctcatctctgcatccaagtctttgtgctgttgatgttgatgtcccacttaacgtcctctgtaaaaatgacgagaagcttgaacaagttttac |
42383 |
T |
|
| Q |
429 |
tagtaagggagtttcacataagtttgggaagaactgttccaatacgagtacatcagattgactcagtggtcacaatgctaaagcagaagcttcagacgca |
528 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42384 |
taggaagggagtttcacataagtttgggaagaactgttccaatacgagtacatcagattgactcagtggtctcaatgctaaagcagaagcttcagacgca |
42483 |
T |
|
| Q |
529 |
acccctgtaagtttttattcttgttttgttcagttttgaaaaattaaacggcatattttttgtcaacccatttacctgattgttgtctttaacttg---- |
624 |
Q |
| |
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||| |||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||| |||||||||| |
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| T |
42484 |
acc----------------cttgttttgttcagttttgaaaaattgaacggcatatttattgtcaacccgtttacctgattgttgcctttaacttgtcat |
42567 |
T |
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| Q |
625 |
---------------tcaactttgacaaatgggaggtttttgttaatgatgatcgcacacacaccttcatctcactcga |
688 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||| |
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| T |
42568 |
tgagtagctactggatcaactttgacaaatgggaggtttttgttaatgatgatcgcacacgcaccttcctctcagtcga |
42646 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0053 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: scaffold0053
Description:
Target: scaffold0053; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 30 - 683
Target Start/End: Original strand, 7791 - 8457
Alignment:
| Q |
30 |
atttacatgtaatgaatttgttgatgtg--atgtgatattcttgaagctaattgattcaaaaggttttatcctgtcaaacggttaggtcatgtttagcca |
127 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||| || |||| |||||||||||||||||| |
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| T |
7791 |
atttacatgtaatgaatttgttgatgttcaatgtgatattcttgaagctgattgattcgaaaggttttatcccgttaaacacttaggtcatgtttagcca |
7890 |
T |
|
| Q |
128 |
ctgcttgcaagactattcaatgtttgatgtcatgcctgcacttccatgttactttataatgcttgagtagacttgacaatggtataaaatttgctcaaaa |
227 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
7891 |
ctgcttgcaagactatttaatgtttgatgtcatacctgtacttccatgttactttataatgcttgagtagacttgacaatgctataaaatttgttcaaaa |
7990 |
T |
|
| Q |
228 |
gtgttcctgctttaaggtgcagtgactttggactcagactgcaat-gttctgtttcagttaatatttcatcttcatcgaaaaaagaagtagccgctttct |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7991 |
gtgttcctgctttaaggtgcagtgactttggactcagactgcaattgttctgtttcagttaatatttcatcttcatcgaaaaaagaagtagccgctttct |
8090 |
T |
|
| Q |
327 |
cgaagaaaatctcatctctgcatccaagtctttgtgctgttgatgttgatgtcccacttaacgtcctctgtaaaaatgacgagaagcttgaacaagtttt |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8091 |
tgaagaaaatctcatctctgcatccaagtctttgtgctgttgatgttgatgtcccacttaacgtcctctgtaaaaatgacgagaagcttgaacaagtttt |
8190 |
T |
|
| Q |
427 |
actagtaagggagtttcacataagtttgggaagaactgttccaatacgagtacatcagattgactcagtggtcacaatgctaaagcagaagcttcagacg |
526 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8191 |
actaggaagggagtttcacataagtttgggaagaactgttccaatacgagtacatcagattgactcagtggtcacaatgctaaaacagaagcttcagaca |
8290 |
T |
|
| Q |
527 |
caacccctgtaagtttttattcttgttttgttcagttttgaaaaattaaacggcatattttttgtcaacccatttacctgattgttgtctttaacttgtc |
626 |
Q |
| |
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||| |||||||||||||||||||| ||||||||||||| ||| | |||||||||||||| || ||||||||||||||| |||||||||||| |
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| T |
8291 |
caatccctgtaagtttttattctt----------gttttgaaaaattgaacagaatattttttgtcaa-ccgtttacctgattgttgcctttaacttgtc |
8379 |
T |
|
| Q |
627 |
a---------------------actttgacaaatgggaggtttttgttaatgatgatcgcacacacaccttcatctca |
683 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
8380 |
atcttgagcagctactggatcgactttgacaaatgggaggtttttgttaatgatgatcgcacacgcaccttcctctca |
8457 |
T |
|
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