View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0747_high_5 (Length: 376)
Name: NF0747_high_5
Description: NF0747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0747_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 570614 - 570966
Alignment:
| Q |
18 |
caaattaaagttgaagtgtcaattgtaaaatagatgactttacttgttagcaaatagtcgttttaactttctttgtttagctcgtttatctcttaatttt |
117 |
Q |
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| T |
570614 |
caaattaaagttgaagtgtcaattgtaaaatagatgactttacttgttagcaaatagtcgttttaactttctgtgtttagctcgtttatctcttaatttt |
570713 |
T |
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| Q |
118 |
ctcttttgtatttatgtaaacaagttattcatgaattgttaaaggttaggctaagatttcggctttgtttggcctagcttttacttgccttctcttctcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
570714 |
ctcttttgtatttatgtaaacaagttattcatgaattgttaaaggttaggctaagatttcggctttgtttggcctagcttttacttgccttctcctctcc |
570813 |
T |
|
| Q |
218 |
ttaaaaatactgataggaatgatattgatagaagctaattagagaaagcatgaattaattataaacctgctttctgttaggtagttagttttagtagttg |
317 |
Q |
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| T |
570814 |
ttaaaaatactgataggaatgatattgatagaagctaattagagaaagaatgaattaattataaatctgctttctgttaggtagttagttttagtagttg |
570913 |
T |
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| Q |
318 |
gtttctgttactcttctattttgtggaataagccatgactagatgccccgatc |
370 |
Q |
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| T |
570914 |
gtttctgttactcttctattttgtggaataagccatgactagatgccctgatc |
570966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 13083864 - 13083822
Alignment:
| Q |
181 |
tttgtttggcctagcttttacttgccttctcttctccttaaaa |
223 |
Q |
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| T |
13083864 |
tttgtttggcttagctttaatttgccttctcttctccttaaaa |
13083822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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