View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0747_low_10 (Length: 350)
Name: NF0747_low_10
Description: NF0747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0747_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 101 - 304
Target Start/End: Complemental strand, 22365229 - 22365026
Alignment:
| Q |
101 |
caccatatccataattccatttgttgctgagtttgcgacatgcttcaattgtgtgtgtttcgttttctttttagtgtggcttttacattcttacaatttt |
200 |
Q |
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| T |
22365229 |
caccatatccataattccatttgttgctgagtttgcgacatgcttcaattgtgtgtgtttcgttttctttttagtgtggcttttacattcttacaatttt |
22365130 |
T |
|
| Q |
201 |
tccttacgaactaagaacgagagctccacctttttggatatttctcaaagtatactatggtctatagtatcaaactattttcttgaccattgacattatc |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22365129 |
tccttacgaactaagaatgagagctccacctttttggatatttctcaaagtatactatggtctatagtatcaaactattttcttgaccattgacattatc |
22365030 |
T |
|
| Q |
301 |
aaag |
304 |
Q |
| |
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|||| |
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| T |
22365029 |
aaag |
22365026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 101 - 184
Target Start/End: Complemental strand, 2788500 - 2788417
Alignment:
| Q |
101 |
caccatatccataattccatttgttgctgagtttgcgacatgcttcaattgtgtgtgtttcgttttctttttagtgtggctttt |
184 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2788500 |
caccatatccataattccagttgttgctgagtttgcgacatgcttcaattgtgtgtgtttcgttttcttttaagtgtggctttt |
2788417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 2788415 - 2788356
Alignment:
| Q |
245 |
tcaaagtatactatggtctatagtatcaaactattttcttgaccattgacattatcaaag |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2788415 |
tcaaagtatactatggtctatagtatcaaactattttcttggccattgacattatcaaag |
2788356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 297
Target Start/End: Original strand, 9368764 - 9368793
Alignment:
| Q |
268 |
tatcaaactattttcttgaccattgacatt |
297 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
9368764 |
tatcaaactattttcttgaccattgacatt |
9368793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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