View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0747_low_12 (Length: 340)
Name: NF0747_low_12
Description: NF0747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0747_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 269
Target Start/End: Original strand, 14645897 - 14646151
Alignment:
| Q |
11 |
aattgcaggaacatggaattttcttttcttcatcttcatggctaaagtggtaatcacaagtaatttcttcaccagctaatagaggaatccaaagggtggc |
110 |
Q |
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| T |
14645897 |
aattgcaggaacatggaattttcttttcttcatcttcatggctaaagtggtaatcacaagtaatttcttcaccagctaatagaggaatccaaagggtggc |
14645996 |
T |
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| Q |
111 |
aacaccaggaacaaccatgtcagtttggcgtaaaggaccatatgagaagccattgttgtgtgtggattgcaattctagcctaaagacagttgaggatttt |
210 |
Q |
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| T |
14645997 |
agcaccagcaacacccataccagtttggcgtaaaggaccatatgagtagccattgttgtgtgtggattgcaattctagcctaaagacagttgaggatttt |
14646096 |
T |
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| Q |
211 |
gagtcaacatggaagtctcttctagataaatatggtcttgaaggaaacgattggcttga |
269 |
Q |
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| T |
14646097 |
g----aacatggacgtctcttatagataaatatggtcttgaaggaaatgattgacttga |
14646151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 192 - 272
Target Start/End: Complemental strand, 16836542 - 16836462
Alignment:
| Q |
192 |
aaagacagttgaggattttgagtcaacatggaagtctcttctagataaatatggtcttgaaggaaacgattggcttgaagc |
272 |
Q |
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| T |
16836542 |
aaagacagttgaggattttgagtcaacatgcaagtctcttctacataaatatggtcttgaaggaaatgattggcttgaagc |
16836462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 91 - 168
Target Start/End: Original strand, 14650707 - 14650784
Alignment:
| Q |
91 |
agaggaatccaaagggtggcaacaccaggaacaaccatgtcagtttggcgtaaaggaccatatgagaagccattgttg |
168 |
Q |
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| T |
14650707 |
agaggaatccaaagggtggaagcaccagcaacaaccattccagtttggcgtaaaggacgatatgagaagccattgttg |
14650784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 14640908 - 14640950
Alignment:
| Q |
83 |
cagctaatagaggaatccaaagggtggcaacaccaggaacaac |
125 |
Q |
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| T |
14640908 |
cagctgatagaggaatccaaagggtggcagcaccagcaacaac |
14640950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 2724768 - 2724678
Alignment:
| Q |
1 |
caattttttgaattgcaggaacatggaattttcttttcttcatcttcatggctaaagtggtaatcacaagtaatttcttcaccagctaata |
91 |
Q |
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| T |
2724768 |
caatttattgaattgcaggaacatgggattttcttttcttcatcttcgcggttgaagtggtaatcataagtgatttcttcaccagctaata |
2724678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 2711093 - 2711003
Alignment:
| Q |
1 |
caattttttgaattgcaggaacatggaattttcttttcttcatcttcatggctaaagtggtaatcacaagtaatttcttcaccagctaata |
91 |
Q |
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| T |
2711093 |
caattttttgaattgcaataacatggaattttcttttcatcatcttctcggttaaagttgtaatcgtaagtaatctcttcaccaggtaata |
2711003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 16972764 - 16972801
Alignment:
| Q |
134 |
tttggcgtaaaggaccatatgagaagccattgttgtgt |
171 |
Q |
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| T |
16972764 |
tttggcgtaaaggaccgtatgagaagccagtgttgtgt |
16972801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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