View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0747_low_15 (Length: 330)

Name: NF0747_low_15
Description: NF0747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0747_low_15
NF0747_low_15
[»] chr8 (12 HSPs)
chr8 (1-324)||(2874729-2875048)
chr8 (10-145)||(3160178-3160313)
chr8 (192-324)||(2797187-2797318)
chr8 (5-122)||(2889409-2889526)
chr8 (196-286)||(3160074-3160164)
chr8 (181-286)||(2889545-2889650)
chr8 (10-75)||(2797334-2797399)
chr8 (168-274)||(18393355-18393460)
chr8 (159-282)||(13097690-13097813)
chr8 (74-119)||(4416772-4416817)
chr8 (5-40)||(3145418-3145453)
chr8 (276-324)||(15020914-15020962)
[»] chr2 (3 HSPs)
chr2 (203-282)||(41849256-41849335)
chr2 (166-279)||(38783557-38783670)
chr2 (159-283)||(26576320-26576443)
[»] chr6 (1 HSPs)
chr6 (166-259)||(2602356-2602448)
[»] chr7 (3 HSPs)
chr7 (177-281)||(11820336-11820440)
chr7 (192-248)||(11816756-11816812)
chr7 (280-324)||(32776131-32776175)
[»] chr1 (1 HSPs)
chr1 (175-274)||(3387908-3388006)
[»] chr5 (1 HSPs)
chr5 (192-274)||(41815421-41815503)
[»] chr4 (2 HSPs)
chr4 (277-324)||(41594760-41594807)
chr4 (271-315)||(41436366-41436410)


Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 2874729 - 2875048
Alignment:
Q  1 ctcataactagagaaactctagtaaccaactctaataatacatcagaatgccttctccactatccatcccctctcttttatctccgtactcacatgagat 100  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2874729 ctcataactagcgaagctctagtaaccaactctaataatacatcagaatgccttctccactatccatcccctctcttttatctccgtactcacatgagat 2874828  T
Q  101 tggtgcacaagtcactaacctatgaagcacgaacacctctaggatatattacgcatgccgcggtctccgacacgcctatgacactcatacaacacgtgtc 200  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2874829 tggtgcacaagtcactaacctatgaagcacggacacctctaggat----tacgcatgtcgcggtctccgacacgcctatgacactcatacaacacgtgtc 2874924  T
Q  201 agacaagtgtactaaataaatggttttctcctttattttgacactccttggactggtgtccaacacctatataaaacttatactccctccgtcccattat 300  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2874925 agacaagtgtactaaataaatggttttcttctttattttgacactccttggactggtgtccaacacctatataaaacttatactccctccgtcccattat 2875024  T
Q  301 aaatgagctttttgttcatctcac 324  Q
    |||| |||||||||||||| ||||    
T  2875025 aaataagctttttgttcatttcac 2875048  T

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Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 3160313 - 3160178
Alignment:
Q  10 agagaaactctagtaaccaactctaataatacatcagaatgccttctccactatccatcccctctcttttatctccgtactcacatgagattggtgcaca 109  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3160313 agagaaactctagtaaccaactccaataatacttcagaatgccttctccactacccatcccctctcttttatctccgtactcacatgagattggtgcaca 3160214  T
Q  110 agtcactaacctatgaagcacgaacacctctaggat 145  Q
    |||||||||||||||||||||| |||||||||||||    
T  3160213 agtcactaacctatgaagcacggacacctctaggat 3160178  T

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Target: chr8; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 192 - 324
Target Start/End: Complemental strand, 2797318 - 2797187
Alignment:
Q  192 acacgtgtcagacaagtgtactaaataaatggttttctcctttattttgacactccttggactggtgtccaacacctatataaaacttatactccctccg 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  2797318 acacgtgtcagacaagtgtactaaataaatggttttctcctttattttgacactccttggactggtgtccaaaacctat-taaaacttatactccctccg 2797220  T
Q  292 tcccattataaatgagctttttgttcatctcac 324  Q
    ||| |||||||||||||||||||||||| ||||    
T  2797219 tccaattataaatgagctttttgttcatttcac 2797187  T

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Target: chr8; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 2889409 - 2889526
Alignment:
Q  5 taactagagaaactctagtaaccaactctaataatacatcagaatgccttctccactatccatcccctctcttttatctccgtactcacatgagattggt 104  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  2889409 taactagagaaactctagtaaccaactctaacaatacttcagaatgccttctccactacccatcccctctcttttatctccctactcacatgagattggt 2889508  T
Q  105 gcacaagtcactaaccta 122  Q
    ||||||||||||||||||    
T  2889509 gcacaagtcactaaccta 2889526  T

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Target: chr8; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 196 - 286
Target Start/End: Complemental strand, 3160164 - 3160074
Alignment:
Q  196 gtgtcagacaagtgtactaaataaatggttttctcctttattttgacactccttggactggtgtccaacacctatataaaacttatactcc 286  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3160164 gtgtccgacaagtgtactaaataaatgtttttctcctttattttgacactccttggactggtgcccaacacctatataaaacttatactcc 3160074  T

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Target: chr8; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 181 - 286
Target Start/End: Original strand, 2889545 - 2889650
Alignment:
Q  181 acactcatacaacacgtgtcagacaagtgtactaaataaatggttttctcctttattttgacactccttggactggtgtccaacacctatataaaactta 280  Q
    |||||| ||| |||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||    
T  2889545 acactcgtacgacacttgtcagacaagtgtactaaataaatatttttctcctttattttgacactccttggactggtacccaacacctctataaaactta 2889644  T
Q  281 tactcc 286  Q
    ||||||    
T  2889645 tactcc 2889650  T

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Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 2797399 - 2797334
Alignment:
Q  10 agagaaactctagtaaccaactctaataatacatcagaatgccttctccactatccatcccctctc 75  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  2797399 agagaaactctagtaaccaaatctaataatacatcagaatgccttctccactacccatcccctctc 2797334  T

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Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 274
Target Start/End: Original strand, 18393355 - 18393460
Alignment:
Q  168 cgacacgcctatgacactcatacaacacgtgtcagacaagtgtactaaataaatggttttctcctttattttgacactccttggactggtgtccaacacc 267  Q
    |||||| |||||||||||| ||| |||||||||  || ||||| |||||||| | ||||||  ||||| || |||||||| ||| | |||||||||||||    
T  18393355 cgacactcctatgacactcgtacgacacgtgtcgaactagtgtcctaaataatttgttttcatctttacttcgacactccctgg-ccggtgtccaacacc 18393453  T
Q  268 tatataa 274  Q
    |||||||    
T  18393454 tatataa 18393460  T

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Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 282
Target Start/End: Complemental strand, 13097813 - 13097690
Alignment:
Q  159 cgcggtctccgacacgcctatgacactcatacaacacgtgtcagacaagtgtactaaataaatggttttctcctttattttgacactccttggactggtg 258  Q
    |||||| |||||||| | |||||||||| ||| ||||| ||| || |||| | ||||||||    |||||| ||||| | ||||||||||| ||| ||||    
T  13097813 cgcggtgtccgacactcatatgacactcgtacgacacgagtcggataagtatcctaaataagatattttcttctttactgtgacactccttagaccggtg 13097714  T
Q  259 tccaacacctatataaaacttata 282  Q
    | | |||||||||||| |||||||    
T  13097713 tgcgacacctatataacacttata 13097690  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 4416817 - 4416772
Alignment:
Q  74 tcttttatctccgtactcacatgagattggtgcacaagtcactaac 119  Q
    ||||||||  ||||||||| ||||||||||||||||||||||||||    
T  4416817 tcttttataaccgtactcatatgagattggtgcacaagtcactaac 4416772  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 3145453 - 3145418
Alignment:
Q  5 taactagagaaactctagtaaccaactctaataata 40  Q
    ||||||||||||||||||||||||||||||| ||||    
T  3145453 taactagagaaactctagtaaccaactctaacaata 3145418  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 324
Target Start/End: Complemental strand, 15020962 - 15020914
Alignment:
Q  276 acttatactccctccgtcccattataaatgagctttttgttcatctcac 324  Q
    ||||||||||||||||||||||| ||| ||||| | |||||||| ||||    
T  15020962 acttatactccctccgtcccattttaagtgagcatattgttcatttcac 15020914  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 282
Target Start/End: Complemental strand, 41849335 - 41849256
Alignment:
Q  203 acaagtgtactaaataaatggttttctcctttattttgacactccttggactggtgtccaacacctatataaaacttata 282  Q
    |||||||| |||||||| |  ||||||  ||||||| |||||||||||||||||||||| |||||||||||| |||||||    
T  41849335 acaagtgtcctaaataagttattttcttttttatttcgacactccttggactggtgtccgacacctatataacacttata 41849256  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 279
Target Start/End: Original strand, 38783557 - 38783670
Alignment:
Q  166 tccgacacgcctatgacactcatacaacacgtgtcagacaagtgtactaaataaatggttttctcctttattttgacactccttggactggtgtccaaca 265  Q
    |||||||| |||||||||| | ||  ||| |||| ||||||||||  ||||||| |  ||||||  | || || |||||||||||||| ||||||| |||    
T  38783557 tccgacactcctatgacacccgtatgacatgtgtgagacaagtgtcttaaataagttattttcttttctacttcgacactccttggaccggtgtccgaca 38783656  T
Q  266 cctatataaaactt 279  Q
    ||| ||||| ||||    
T  38783657 cctgtataacactt 38783670  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 283
Target Start/End: Complemental strand, 26576443 - 26576320
Alignment:
Q  159 cgcggtctccgacacgcctatgacactcatacaacacgtgtcagacaagtgtactaaataaatggttttctcctttattttgacactccttggactggtg 258  Q
    |||||| |||||||| |||||||||| | ||| |||||||||  ||  ||||  ||||||| || |||| || |||| ||||||||||||  ||  |||     
T  26576443 cgcggtgtccgacactcctatgacacccgtacgacacgtgtcgaaccggtgtcttaaataattgattttttc-tttactttgacactcctacgatcggtc 26576345  T
Q  259 tccaacacctatataaaacttatac 283  Q
    |||||||||||||||| ||| ||||    
T  26576344 tccaacacctatataacactcatac 26576320  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 259
Target Start/End: Complemental strand, 2602448 - 2602356
Alignment:
Q  166 tccgacacgcctatgacactcatacaacacgtgtcagacaagtgtactaaataaatggttttctcctttattttgacactccttggactggtgt 259  Q
    ||||||||  ||||||||| ||||| ||||||||| ||||||||  | |||| | | ||||||| ||||||||||||||||||||||| |||||    
T  2602448 tccgacactgctatgacacacatacgacacgtgtcggacaagtgc-caaaatgagttgttttctactttattttgacactccttggaccggtgt 2602356  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 177 - 281
Target Start/End: Original strand, 11820336 - 11820440
Alignment:
Q  177 tatgacactcatacaacacgtgtcagacaagtgtactaaataaatggttttctcctttattttgacactccttggactggtgtccaacacctatataaaa 276  Q
    |||||||||| ||| ||||||||||||||||||| |||||||| |  |||||| ||||| |||| ||||| | |||  ||||||  ||| |||||||| |    
T  11820336 tatgacactcgtacgacacgtgtcagacaagtgttctaaataagttattttcttctttactttgtcactcttaggatcggtgtctgacatctatataaca 11820435  T
Q  277 cttat 281  Q
    |||||    
T  11820436 cttat 11820440  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 11816756 - 11816812
Alignment:
Q  192 acacgtgtcagacaagtgtactaaataaatggttttctcctttattttgacactcct 248  Q
    ||||||||||||| ||||| |||||||| |  |||||| |||||||| |||||||||    
T  11816756 acacgtgtcagacgagtgtcctaaataagttattttcttctttatttcgacactcct 11816812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 32776175 - 32776131
Alignment:
Q  280 atactccctccgtcccattataaatgagctttttgttcatctcac 324  Q
    ||||||||||||| ||||||||||||||| ||||| |||| ||||    
T  32776175 atactccctccgttccattataaatgagccttttgctcatttcac 32776131  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 274
Target Start/End: Complemental strand, 3388006 - 3387908
Alignment:
Q  175 cctatgacactcatacaacacgtgtcagacaagtgtactaaataaatggttttctcctttattttgacactccttggactggtgtccaacacctatataa 274  Q
    |||||||||||| ||| ||||||||| ||| |||||  ||||||| | ||||||  ||||| || |||||||| ||| | ||||||||||||||||||||    
T  3388006 cctatgacactcgtacgacacgtgtcggactagtgtcttaaataatttgttttcatctttacttcgacactccctggtc-ggtgtccaacacctatataa 3387908  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 274
Target Start/End: Original strand, 41815421 - 41815503
Alignment:
Q  192 acacgtgtcagacaagtgtactaaata-aatggttttctcctttattttgacactccttggactggtgtccaacacctatataa 274  Q
    |||||||||||||||||||  |||||| |||  |||| ||||||| |  |||||||||| ||| ||||||||||||||||||||    
T  41815421 acacgtgtcagacaagtgttttaaatacaattatttt-tcctttactcggacactcctttgaccggtgtccaacacctatataa 41815503  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 41594760 - 41594807
Alignment:
Q  277 cttatactccctccgtcccattataaatgagctttttgttcatctcac 324  Q
    ||||||||||||||||||||||||||  |||| |||||||||| ||||    
T  41594760 cttatactccctccgtcccattataagcgagccttttgttcatttcac 41594807  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 41436366 - 41436410
Alignment:
Q  271 ataaaacttatactccctccgtcccattataaatgagctttttgt 315  Q
    |||||| | |||||||||||||||||| |||| ||||||||||||    
T  41436366 ataaaattgatactccctccgtcccataataactgagctttttgt 41436410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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