View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0747_low_17 (Length: 314)
Name: NF0747_low_17
Description: NF0747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0747_low_17 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 15217139 - 15217452
Alignment:
| Q |
1 |
ggattttatggtataaagtcttagtggcgcgttatggtgaggaggagccgtttgaatgatattatttggcataaggaagttcctttgaaagtatccttat |
100 |
Q |
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| T |
15217139 |
ggattttatggtataaagtcttagtggcgcgttatggtgaggaggagccgtttgaatgatattatttggcataaagaagttcctttgaaagtatccttat |
15217238 |
T |
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| Q |
101 |
ttgttcagtgtcttcttcgtaaccgaattccagctaagaataatttatttcggtgagacatccttcatcgggacactcatctttgtatgtttaggtgtgg |
200 |
Q |
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| T |
15217239 |
ttgttcagcgtcttcttcgttaccgaattccagctaagaataatttatttcggtgagacatccttcatcaggacactcatctttgtatgtttaggtgtgg |
15217338 |
T |
|
| Q |
201 |
tttggtggaatcagcggaacatttatttttggtttatccctattttgacagcatctgacatcttcttcgacaatggcttgacatataaggtgttgatcct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
15217339 |
tttggtggaatcagcggaacatttatttttggtttatccctattttgacagcatctgacatcttcttcgacaatggcttgacatattaggtgttgatcct |
15217438 |
T |
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| Q |
301 |
ctttgtgtatttat |
314 |
Q |
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|||||||||||||| |
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| T |
15217439 |
ctttgtgtatttat |
15217452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 9608981 - 9608938
Alignment:
| Q |
62 |
ttatttggcataaggaagttcctttgaaagtatccttatttgtt |
105 |
Q |
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||||||| ||||||||||||||||||||| |||| ||||||||| |
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| T |
9608981 |
ttatttgacataaggaagttcctttgaaaatatctttatttgtt |
9608938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 21499374 - 21499334
Alignment:
| Q |
6 |
ttatggtataaagtcttagtggcgcgttatggtgaggagga |
46 |
Q |
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|||||||||||||||||||| ||| | |||||||||||||| |
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| T |
21499374 |
ttatggtataaagtcttagttgcgaggtatggtgaggagga |
21499334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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