View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0747_low_19 (Length: 288)

Name: NF0747_low_19
Description: NF0747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0747_low_19
NF0747_low_19
[»] chr5 (2 HSPs)
chr5 (46-240)||(39115273-39115481)
chr5 (148-240)||(38617125-38617217)


Alignment Details
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 46 - 240
Target Start/End: Original strand, 39115273 - 39115481
Alignment:
Q  46 agcagagatgagtggttgtggtttaggactgtggttgaacattagcttattaattattcattaggttgcattatatttgtcaccatgggccattcacttc 145  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39115273 agcaaagatgagtggttgtggtttaggactgtggttgaacattagcttattaattattcattaggttgcattatatttgtcaccatgggccattcacttc 39115372  T
Q  146 acatttgt--------------ataatgtgacagtagatctctatattagaccactataggctagcaatggacttccacttgtgtgcaactttgtctttg 231  Q
    ||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39115373 acatttgtataatttgatttgaataatgtgacagtagatctctatattagaccactataggctagcaatggacttccacttgtgtgcaactttgtctttg 39115472  T
Q  232 gtgtctgtg 240  Q
    |||||||||    
T  39115473 gtgtctgtg 39115481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 148 - 240
Target Start/End: Complemental strand, 38617217 - 38617125
Alignment:
Q  148 atttgtataatgtgacagtagatctctatattagaccactataggctagcaatggacttccacttgtgtgcaactttgtctttggtgtctgtg 240  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  38617217 atttgaataatgtgaaagtagatctctatattagaccactataggctagcaatggacttccacttgagtgcaactttgtctttcgtgtctgtg 38617125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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