View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0747_low_24 (Length: 263)
Name: NF0747_low_24
Description: NF0747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0747_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 5 - 254
Target Start/End: Complemental strand, 26593513 - 26593264
Alignment:
| Q |
5 |
tttactctgtttaggggagactttaccacaagagaccttggtaggcttaatctacataaacttgttagacgaaatgcttgattccctcatctttgccatg |
104 |
Q |
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| T |
26593513 |
tttactctatttaggagagactttaccacaagagaccttggtaggcttaatctacataaacttgttagacgaaatgcttgattccctcatctttgccatg |
26593414 |
T |
|
| Q |
105 |
tcaaaactcggatactccaagacataaaagaacctgacttgaacgtttacaacgcggccacaaacaatctcaatctcatccaaagaatgacaacaaaacc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26593413 |
tcaaaactcggatactccaagacataaaagaacctgacgtgaacgtttacaacgcagccacaaacaatcccaatctcatccaaagaatgacaacaaaacc |
26593314 |
T |
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| Q |
205 |
accaatcgaaacaccaatgtgccctggtgtccccatacccaccttcatct |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26593313 |
accaatcgaaacaccaatgtgccctggtgtccccatacccaccttcatct |
26593264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 34750155 - 34750052
Alignment:
| Q |
20 |
ggagactttaccacaagagaccttggtag--gcttaatctacataaacttgttagacgaaatgcttgattccctcatctttgccatgtcaaaactcggat |
117 |
Q |
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||||| || ||||||||||||| || ||| |||||||||||| ||||||||||||| |||||||||| |||||| |||||||||||||||||||||||| |
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| T |
34750155 |
ggagatttcaccacaagagaccctgatagtggcttaatctacagaaacttgttagaccaaatgcttgactccctcctctttgccatgtcaaaactcggat |
34750056 |
T |
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| Q |
118 |
actc |
121 |
Q |
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|||| |
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| T |
34750055 |
actc |
34750052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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