View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0747_low_3 (Length: 615)
Name: NF0747_low_3
Description: NF0747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0747_low_3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 192 - 487
Target Start/End: Complemental strand, 24414321 - 24414033
Alignment:
| Q |
192 |
attattagttgatttgagataaatcagtcccgtcttttatcctattgtgaaggagcgtatttcttaaatcctattgaagttattggtgaataggcaagaa |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24414321 |
attattagttgatttgagataaatcagtcccgtcttttatcctattgtgaaggaacatatttcttaaatcctattgaagttattggtgaataggcaagaa |
24414222 |
T |
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| Q |
292 |
ctgatttccagacctatatgtcttcatttgcttatttgattgtttttcttcattccgattccttannnnnnnaattattagttgcaaggaagttgattct |
391 |
Q |
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| T |
24414221 |
ccaatttccagacctatatgtcttcatttgcttatttgattgtttttcttcatttgtattccttatt-------ttttttgttgcaagggagttgattct |
24414129 |
T |
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| Q |
392 |
acaacagcaactaaagcacgtgtaatattgaagttcaagcaacggttgaggtaaagggctttggaacgttggcgactgactcacggtggtgggaga |
487 |
Q |
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|||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24414128 |
acaacagcaattaaagcacgtctaatattgaagttgaagcaacggttgaggtaaagggctttggaacgttggcgactgactcacggtggtgggaga |
24414033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 270 - 615
Target Start/End: Complemental strand, 19024446 - 19024109
Alignment:
| Q |
270 |
gttattggtgaataggcaagaactgatttccagacctatatgtcttcatttgcttatttgattgtttttcttcattccgattccttannnnnnnaattat |
369 |
Q |
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| T |
19024446 |
gttattggtgaataggaaagaataaatttccagacctatatgtcttcatttgcttatttgattgtttttcttcatttgtattccttatt-------tttt |
19024354 |
T |
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| Q |
370 |
tagttgcaaggaagttgattctacaacagcaactaaagcacgtgtaatattgaagttcaagcaacggttgaggtaaagggctttggaacgttggcgactg |
469 |
Q |
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| T |
19024353 |
ttgttgcaagggagttgattctacaacaacaactaaagcatgtgtaatattgaagttcaa-caacggttgaggtaaagggcttcggaacgttgatatctg |
19024255 |
T |
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| Q |
470 |
actcacggtggtgggagagagcttgaagtggtaacaaaatcatctctcctaagaatttcactttagattctctgtttgtgttctgttccatggtaaaaat |
569 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
19024254 |
actcacggtggtgggagagaacttgaagtggtaacacaatcacctcccctaagaatttcactttagattctctgtttgtgttctgttccatggtaacaat |
19024155 |
T |
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| Q |
570 |
aataactataggattttttgttaactatcatcaaagaaactgacat |
615 |
Q |
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| T |
19024154 |
aataactataggacttcttgttaactatcatcaaagaaactaacat |
19024109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 30397438 - 30397397
Alignment:
| Q |
82 |
tggtatttcttaggaatgttttctagacgaacctatattgca |
123 |
Q |
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| T |
30397438 |
tggtatttcttaagactgttttctagactaacctatattgca |
30397397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 157 - 195
Target Start/End: Original strand, 48011384 - 48011422
Alignment:
| Q |
157 |
atgaggcagagaatatgacatgggaatcaaagtacatta |
195 |
Q |
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| T |
48011384 |
atgaggcagagcatgtgacatgggaatcaaagtacatta |
48011422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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