View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0747_low_35 (Length: 221)
Name: NF0747_low_35
Description: NF0747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0747_low_35 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0608 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 31 - 221
Target Start/End: Complemental strand, 46933444 - 46933254
Alignment:
| Q |
31 |
atgaaagcaagactataatgctcgtggttgagaaccgacacagattgtggaatggttctattagacaagaactggtcattggtcagaagcacctcctttg |
130 |
Q |
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| T |
46933444 |
atgaaagcaagactataatgctcgtggttgagaaccgacacagattgtggaatggttctattagacaagaactggtcattggtcagaagcacctcctttg |
46933345 |
T |
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| Q |
131 |
ccatgttggctgaggagacgacgacagtggttattcggccaaacttgagacttattatagaaccatgaatctttgtaagattggctaagga |
221 |
Q |
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| T |
46933344 |
ccatgttggctgaggagacgacgacagtggttattcggccaaacttgagacttattatagaaccatgaatctttgtaagattggctaagga |
46933254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 31 - 200
Target Start/End: Complemental strand, 46926579 - 46926410
Alignment:
| Q |
31 |
atgaaagcaagactataatgctcgtggttgagaaccgacacagattgtggaatggttctattagacaagaactggtcattggtcagaagcacctcctttg |
130 |
Q |
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| T |
46926579 |
atgaaagcaagactatactgctcatggttgagaactgacacagtttgaggtatgtttctctttgacaagaacttgtcattggttaggagaacctctttag |
46926480 |
T |
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| Q |
131 |
ccatgttggctgaggagacgacgacagtggttattcggccaaacttgagacttattatagaaccatgaat |
200 |
Q |
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| T |
46926479 |
ccattgttgctgaggagataacaatagtggttatttggccaaacttgagactcattaaagggccatgaat |
46926410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 11107480 - 11107567
Alignment:
| Q |
32 |
tgaaagcaagactataatgctcgtggttgagaaccgacacagattgtggaatggttctattagacaagaactggtcattggtcagaag |
119 |
Q |
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| T |
11107480 |
tgaatgcaagactatattggtcatggttgagaactgacacagattgtggaacagtcctatttgacaagaatttgtcattggtgagaag |
11107567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0608
Description:
Target: scaffold0608; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 2919 - 3006
Alignment:
| Q |
32 |
tgaaagcaagactataatgctcgtggttgagaaccgacacagattgtggaatggttctattagacaagaactggtcattggtcagaag |
119 |
Q |
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| T |
2919 |
tgaatgcaagactatattggtcatggttgagaactgacacagattgtggaacagtcctatttgacaagaatttgtcattggtgagaag |
3006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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