View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0747_low_4 (Length: 520)
Name: NF0747_low_4
Description: NF0747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0747_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 11 - 394
Target Start/End: Original strand, 26593579 - 26593962
Alignment:
| Q |
11 |
aatgagttggtcatgtcaaagaatttgagcattggtgctatcacaccgtctcctttgttggattggaatgtcccgcttgacgttggtaatgttaattgta |
110 |
Q |
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| T |
26593579 |
aatgagttggtcatgtcaaagaatttgagcattggtgctatcacaccgtctcttttgttggattggaatgtcccgcttgacgttggtaatgttaattgta |
26593678 |
T |
|
| Q |
111 |
agacatccatggctaatggggtgtcacttttaatgcctctgatgttctgtgatttgagtgctcttttgatgcttttcattactgggccaagatcatgcca |
210 |
Q |
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| T |
26593679 |
agacatccatggctaatggggtgtcacttttgatgcctctgatgttctgtgatttgagtgctcttttgatgcttttcattactgggccaagatcatgcca |
26593778 |
T |
|
| Q |
211 |
cattttg-tgatcttgttctgaattgtacaatagtacttcgttttcctacaagtaagaagtgaattaggatttttgggtgagtatttcccctgcttataa |
309 |
Q |
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| T |
26593779 |
cattttgttgatcttgttctgaattgtactatagtacttcg-tttcctacaagtaagaagtgaattaggatttttgggtgaggattgcccttgcttataa |
26593877 |
T |
|
| Q |
310 |
atatttttcatgccatatcacttccaagacagtcacatctccgcaattctaattaaggtttcataagccgctttcgactgattct |
394 |
Q |
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| T |
26593878 |
atatttttcatgccatatcacttccaagacagtcacatctctgcaatcctaattaaggtttcataagccgctttcgactgattct |
26593962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 29 - 266
Target Start/End: Original strand, 34750253 - 34750489
Alignment:
| Q |
29 |
aagaatttgagcattggtgctatcacaccgtctcctttgttggattggaatgtcccgcttgacgttggtaatgttaattgtaagacatccatggctaatg |
128 |
Q |
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|||||||||||||||||||| ||||||| ||||| | ||| |||| ||||||| || ||||||| ||| || ||| ||| |||||||||||||||||||| |
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| T |
34750253 |
aagaatttgagcattggtgccatcacactgtctcttatgtcggatcggaatgttccacttgacggtgggaaggttgattctaagacatccatggctaatg |
34750352 |
T |
|
| Q |
129 |
gggtgtcacttttaatgcctctgatgttctgtgatttgagtgctcttttgatgcttttcattactgggccaagatcatgccacattttgtgatcttgttc |
228 |
Q |
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||||| || |||| |||||||| || ||||| || ||||||||||| ||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||| |
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| T |
34750353 |
gggtgccaattttgatgcctcttatattctgagaattgagtgctctcttgatgcttctcattgctgggacaagatcatgccacattttgtgaccttgttc |
34750452 |
T |
|
| Q |
229 |
tgaattgtacaatagtacttcgttttcctacaagtaag |
266 |
Q |
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| T |
34750453 |
tgaattgtagcttagcacttc-atttcctacaagtaag |
34750489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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