View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0747_low_9 (Length: 354)
Name: NF0747_low_9
Description: NF0747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0747_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 30 - 348
Target Start/End: Complemental strand, 5446021 - 5445703
Alignment:
| Q |
30 |
aaatgtagatcaatccctccacatagagaatcaagctcaataactgtttgtgaagatgaagaaagtaacctctttgctttctcacatgctgatcttaacc |
129 |
Q |
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| T |
5446021 |
aaatgtagatcaatccctccacatagagaatcaagctcaataactgtttgtgaagatgaagaaagtaacctctttgctttctcacatgctgatcttaacc |
5445922 |
T |
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| Q |
130 |
tccccaaagctttgaaattctcactgatcttcaaatccttcttgtactttctatgaaataattcaacaagacggttcaccaaattgttatcgaaatcaat |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5445921 |
tccccaaagctttgaaattctcactgatcttcaaatccttcttgtactttctatgaaataattcaacaagacggttcaccaaattgttatcgaaatcaat |
5445822 |
T |
|
| Q |
230 |
accacccaaatgagtatctcccaatgtggccttaacctggaacattccttcatcaatggtcactaaggaaacatcgaatgttccaccaccaagatcaaac |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5445821 |
accacccaaatgagtatctcccaatgtggccttaacctggaacattccttcatcaatggtcactaaggaaacatcgaatgttccaccaccaagatcaaac |
5445722 |
T |
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| Q |
330 |
acaagcacattcatctcac |
348 |
Q |
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| T |
5445721 |
acaagcacattcttctcac |
5445703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 86 - 331
Target Start/End: Original strand, 5440705 - 5440959
Alignment:
| Q |
86 |
tgaagaaagtaacctctttgctttctcacatgctgatcttaac----ctccccaaagctttgaaattctcactgatcttcaaatccttcttgtactttct |
181 |
Q |
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||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5440705 |
tgaagaaggtaacctctttgctttctcacatgctgaccttaactaacctccccaaagctttggaattctcactgatcttcaaatccttcttgtactttct |
5440804 |
T |
|
| Q |
182 |
atgaaataattcaacaagacggttcaccaaattgttatcgaaatcaataccacccaa--atga--gtatctcccaatgtggccttaacctggaacattcc |
277 |
Q |
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|| |||||||||||||||| ||||||||||||||||||| || |||| | ||||||| || | |||| || |||||| || ||||| | ||| ||||| |
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| T |
5440805 |
ataaaataattcaacaagaaggttcaccaaattgttatcaaactcaacatcacccaaacattaacgtatgtctcaatgttgctttaactttgaatattcc |
5440904 |
T |
|
| Q |
278 |
ttcatcaatggt-cactaaggaaacatcgaatgttccaccaccaagatcaaacac |
331 |
Q |
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||| |||||| | |||||||||||||| || |||||||||||||| || ||||| |
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| T |
5440905 |
ttcgtcaatgatggactaaggaaacatcaaaagttccaccaccaaggtcgaacac |
5440959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 99 - 266
Target Start/End: Original strand, 5433330 - 5433497
Alignment:
| Q |
99 |
ctctttgctttctcacatgctgatcttaacctccccaaagctttgaaattctcactgatcttcaaatccttcttgtactttctatgaaataattcaacaa |
198 |
Q |
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|||||| |||| ||||||||||| ||||| |||| |||||||||| ||||||||||||| |||||||| |||||||||||||||||||| |||||||||| |
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| T |
5433330 |
ctctttactttatcacatgctgaccttaatctccacaaagctttggaattctcactgatgttcaaatctttcttgtactttctatgaaacaattcaacaa |
5433429 |
T |
|
| Q |
199 |
gacggttcaccaaattgttatcgaaatcaataccacccaaatgagtatctcccaatgtggccttaacc |
266 |
Q |
| |
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|||||||||||||||||||||| || |||| ||||| ||||||||||||| ||||| ||| |||||| |
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| T |
5433430 |
gacggttcaccaaattgttatcaaagtcaacaccacttaaatgagtatctctcaatgaggctttaacc |
5433497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 247
Target Start/End: Original strand, 5432453 - 5432565
Alignment:
| Q |
135 |
aaagctttgaaattctcactgatcttcaaatccttcttgtactttctatgaaataattcaacaagacggttcaccaaattgttatcgaaatcaataccac |
234 |
Q |
| |
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|||||||| ||||||||| || ||||| || ||||||||| |||| | || ||||||||||||| |||||||||||||||||| |||| | | ||| |
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| T |
5432453 |
aaagctttataattctcaccaatgttcaagtctttcttgtacattctctttaacaattcaacaagacagttcaccaaattgttatcaaaattgaaagcac |
5432552 |
T |
|
| Q |
235 |
ccaaatgagtatc |
247 |
Q |
| |
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||||||||||||| |
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| T |
5432553 |
ccaaatgagtatc |
5432565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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