View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0748_high_12 (Length: 313)
Name: NF0748_high_12
Description: NF0748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0748_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 22 - 261
Target Start/End: Complemental strand, 49389662 - 49389422
Alignment:
| Q |
22 |
gcaagcatgagttattgaaaaatgatgtagaa-tttattcaaaatgtatagagttgtgatatacatgttaaaactgaatatcttgtgaacctacatatta |
120 |
Q |
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||||||||||||| ||||||| |||| || || ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| || |
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| T |
49389662 |
gcaagcatgagttgttgaaaagtgatataaaaatttattcaaaatgtatagagttgtgatatacatgttaaagttgaatatcttgttaacctacat--ta |
49389565 |
T |
|
| Q |
121 |
aaatatagtactgatacgtcgactttagctttgataaatttt--gagatgtattttttgtatggacatgcaattttgagctagcttctccactgatctaa |
218 |
Q |
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|||||||||||||||| ||| |||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||| | ||||||| |
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| T |
49389564 |
aaatatagtactgatatgtcatctttagttttgataaattttttgagatgtattttttgtatgggcatgcaattttgagcttgcttctcgatcgatctaa |
49389465 |
T |
|
| Q |
219 |
catgtgttgcagcattgttcttttaagattattaaaataaaat |
261 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| |
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| T |
49389464 |
cattcgttgcagcattgttcttttaagattattaaaataaaat |
49389422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 10946052 - 10945809
Alignment:
| Q |
19 |
gatgcaagcatgagttattgaaaaatgatgtagaa-tttattcaaaatgtatagagttgtgatatacatgttaaaactgaatatcttgtgaacctacata |
117 |
Q |
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|||||||||||||||| ||||||| |||| || || ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
10946052 |
gatgcaagcatgagttgttgaaaagtgatataaaaatttattcaaaatgtatagagttgtgatatacatgttaaagttgaatatcttgttaacctacat- |
10945954 |
T |
|
| Q |
118 |
ttaaaatatagtactgatacgtcgactttagctttgataaatttt--gagatgtattttttgtatggacatgcaattttgagctagcttctccactgatc |
215 |
Q |
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| T |
10945953 |
-taaaatatagtactgatatgtcatctttagttttgataaattttttgagatgtattttttgtgtgggcatgcaattttgagcttgcttctcgatcgatc |
10945855 |
T |
|
| Q |
216 |
taacatgtgttgcagcattgttcttttaagattattaaaataaaat |
261 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
10945854 |
taacattcgttgcagcattgttcttttaagattattaaaataaaat |
10945809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 22 - 262
Target Start/End: Complemental strand, 10940180 - 10939939
Alignment:
| Q |
22 |
gcaagcatgagttattgaaaaatgatgtagaa-tttattcaaaatgtatagagttgtgatatacatgttaaaactgaatatcttgtgaacctacatatta |
120 |
Q |
| |
|
||||||||||||| ||||||| |||| || || ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| || |
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| T |
10940180 |
gcaagcatgagttgttgaaaagtgatataaaaatttattcaaaatgtatagagttgtgatatacatgttaaagttgaatatcttgttaacctacat--ta |
10940083 |
T |
|
| Q |
121 |
aaatatagtactgatacgtcgactttagctttgataaatttt--gagatgtattttttgtatggacatgcaattttgagctagcttctccactgatctaa |
218 |
Q |
| |
|
|||||||||| ||||| ||| |||||| ||||||||||||| |||||||||||||||| ||| |||||||||||||||| ||||||| | ||||||| |
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| T |
10940082 |
aaatatagtattgatatgtcatctttagttttgataaattttttgagatgtattttttgtgtgggcatgcaattttgagcttgcttctcgatcgatctaa |
10939983 |
T |
|
| Q |
219 |
catgtgttgcagcattgttcttttaagattattaaaataaaatg |
262 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10939982 |
cattcgttgcagcattgttcttttaagattattaaaataaaatg |
10939939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 22 - 262
Target Start/End: Complemental strand, 24043709 - 24043468
Alignment:
| Q |
22 |
gcaagcatgagttattgaaaaatgatgtagaa-tttattcaaaatgtatagagttgtgatatacatgttaaaactgaatatcttgtgaacctacatatta |
120 |
Q |
| |
|
||||||||||||| ||||||| |||| || || ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| || |
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| T |
24043709 |
gcaagcatgagttgttgaaaagtgatataaaaatttattcaaaatgtatagagttgtgatatacatgttaaagttgaatatcttgttaacctacat--ta |
24043612 |
T |
|
| Q |
121 |
aaatatagtactgatacgtcgactttagctttgataaatttt--gagatgtattttttgtatggacatgcaattttgagctagcttctccactgatctaa |
218 |
Q |
| |
|
|||||||||| ||||| ||| |||||| ||||||||||||| |||||||||||||||| ||| |||||||||||||||| ||||||| | ||||||| |
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| T |
24043611 |
aaatatagtattgatatgtcatctttagttttgataaattttttgagatgtattttttgtgtgggcatgcaattttgagcttgcttctcgatcgatctaa |
24043512 |
T |
|
| Q |
219 |
catgtgttgcagcattgttcttttaagattattaaaataaaatg |
262 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24043511 |
cattcgttgcagcattgttcttttaagattattaaaataaaatg |
24043468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 13817131 - 13817308
Alignment:
| Q |
22 |
gcaagcatgagttattgaaaaatgatgtagaa-tttattcaaaatgtatagagttgtgatatacatgttaaaactgaatatcttgtgaacctacatatta |
120 |
Q |
| |
|
||||||||||||| ||||||| |||| || || |||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||| |||| |
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| T |
13817131 |
gcaagcatgagttgttgaaaagtgatataaaaatttattcaaaatgtatagagttgtaatatacatgttaaagttgaatatcttgttaacctac--atta |
13817228 |
T |
|
| Q |
121 |
aaatatagtactgatacgtcgactttagctttgataaa--ttttgagatgtattttttgtatggacatgcaattttgagc |
198 |
Q |
| |
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|||||||||| ||||| ||| |||||| ||||||||| |||||||||||||||||||| ||| ||||||||||||||| |
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| T |
13817229 |
aaatatagtaatgatatgtcatctttagttttgataaattttttgagatgtattttttgtgtgggcatgcaattttgagc |
13817308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 262
Target Start/End: Original strand, 13817306 - 13817339
Alignment:
| Q |
229 |
agcattgttcttttaagattattaaaataaaatg |
262 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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|
| T |
13817306 |
agcattgttcttttaagattattaaaataaaatg |
13817339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 260
Target Start/End: Original strand, 14656157 - 14656245
Alignment:
| Q |
172 |
tttttgtatggacatgcaattttgagctagcttctccactgatctaacatgtgttgcagcattgttcttttaagattattaaaataaaa |
260 |
Q |
| |
|
||||||| ||||||| ||||||||||||| ||||| || |||||||||||| ||||| ||||||| |||||||||||||||||||||| |
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|
| T |
14656157 |
tttttgtgtggacatacaattttgagctatcttcttgacggatctaacatgtcttgcaacattgtttttttaagattattaaaataaaa |
14656245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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